RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1174207" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1174207 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1590567 1590567 PRJNA1174207_P_NODE_42282_length_235_cov_5.358025_g41753_i0 PRJNA1174207 42282 235 5.358025 12.59135875 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 429 8.33e-116   NTclustered gi|325195057|emb|FR825852.1| 890382 g41753 i0 99.574 102.191489361702 235 1 100 0 1 235 176 410 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 24015 429 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
9243757 9243757 PRJNA1174207_P_NODE_38468_length_245_cov_0.895349_g37939_i0 PRJNA1174207 38468 245 0.895349 2.19360505 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 436 5.229999999999999e-118   NTclustered gi|325194231|emb|FR825088.1| 890382 g37939 i0 98.776 2.16734693877551 245 3 100 0 1 245 1275 1519 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 531 436 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
9243856 9243856 PRJNA1174207_P_NODE_43288_length_226_cov_2.143791_g42759_i0 PRJNA1174207 43288 226 2.143791 4.84496766 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 257 3.97e-64   NTclustered gi|673036739|ref|XM_008874109.1| 157072 g42759 i0 88.942 0.920353982300885 208 23 92 0 1 208 339 546 Aphanomyces invadans hypothetical protein partial mRNA blastn 208 257 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
16892979 16892979 PRJNA1174207_P_NODE_41754_length_241_cov_0.916667_g41225_i0 PRJNA1174207 41754 241 0.916667 2.20916747 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 259 1.19e-64   NTclustered gi|673052656|ref|XM_008882067.1| 157072 g41225 i0 90 21.5477178423237 200 20 83 0 1 200 465 664 Aphanomyces invadans 40S ribosomal protein S15a mRNA blastn 5193 259 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;