RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1174207" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1174207 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1590221 1590221 PRJNA1174207_P_NODE_23662_length_292_cov_1.406393_g23133_i0 PRJNA1174207 23662 292 1.406393 4.10666756 Nitrospira sp. KM1 1936990 Bacteria Bacteria 523 4.769999999999998e-144   NTclustered gi|1808878785|dbj|AP022671.1| 1936990 g23133 i0 98.973 50.2979452054795 292 3 100 0 1 292 4207867 4207576 Nitrospira sp. KM1 DNA, complete genome blastn 14687 523 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. KM1
5418382 5418382 PRJNA1174207_P_NODE_10745_length_461_cov_2.582474_g10219_i0 PRJNA1174207 10745 461 2.582474 11.90520514 Nitrospira sp. 70125 Bacteria Bacteria 721 0   NTclustered gi|2290907019|gb|CP060499.1| 70125 g10219 i0 94.989 60.1713665943601 459 23 99 0 1 459 2684947 2684489 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 27739 721 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
5418927 5418927 PRJNA1174207_P_NODE_39285_length_244_cov_0.900585_g38756_i0 PRJNA1174207 39285 244 0.900585 2.1974274 Nitrospira sp. KM1 1936990 Bacteria Bacteria 263 9.34e-66   NTclustered gi|1808878785|dbj|AP022671.1| 1936990 g38756 i0 86.179 1.97540983606557 246 31 100 3 1 244 3383688 3383932 Nitrospira sp. KM1 DNA, complete genome blastn 482 263 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. KM1
6693727 6693727 PRJNA1174207_P_NODE_37806_length_246_cov_0.890173_g37277_i0 PRJNA1174207 37806 246 0.890173 2.18982558 Nitrospira sp. 70125 Bacteria Bacteria 289 1.56e-73   NTclustered gi|2511640680|gb|CP126121.1| 70125 g37277 i0 88.608 0.963414634146341 237 27 96 0 10 246 3153555 3153319 MAG: Nitrospira sp. isolate bin_001 chromosome, complete genome blastn 237 289 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
13069087 13069087 PRJNA1174207_P_NODE_20951_length_310_cov_2.919831_g20422_i0 PRJNA1174207 20951 310 2.919831 9.0514761 Nitrospira sp. 70125 Bacteria Bacteria 154 7.72e-33   NTclustered gi|2290911150|gb|CP060501.1| 70125 g20422 i0 85.235 0.961290322580645 149 22 48 0 161 309 326242 326094 MAG: Nitrospira sp. isolate NSFW chromosome, complete genome blastn 298 154 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
16892879 16892879 PRJNA1174207_P_NODE_36834_length_247_cov_0.885057_g36305_i0 PRJNA1174207 36834 247 0.885057 2.18609079 Nitrospira sp. 70125 Bacteria Bacteria 291 4.35e-74   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g36305 i0 87.854 4.1497975708502 247 30 100 0 1 247 222397 222151 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 1025 291 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
21992035 21992035 PRJNA1174207_P_NODE_17178_length_344_cov_3.896679_g16649_i0 PRJNA1174207 17178 344 3.896679 13.40457576 Nitrospira sp. KM1 1936990 Bacteria Bacteria 614 3.309999999999999e-171   NTclustered gi|1808878785|dbj|AP022671.1| 1936990 g16649 i0 98.837 83.9273255813954 344 4 100 0 1 344 4208187 4207844 Nitrospira sp. KM1 DNA, complete genome blastn 28871 614 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. KM1
24541745 24541745 PRJNA1174207_P_NODE_35240_length_249_cov_0.875000_g34711_i0 PRJNA1174207 35240 249 0.875 2.17875 Nitrospira sp. 70125 Bacteria Bacteria 185 2.1299999999999994e-42   NTclustered gi|2511631678|gb|CP126123.1| 70125 g34711 i0 80.237 2.93975903614458 253 45 100 4 1 249 962903 963154 MAG: Nitrospira sp. isolate bin_003 chromosome, complete genome blastn 732 185 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;