RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1174207" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA1174207 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
315964 315964 PRJNA1174207_P_NODE_41321_length_241_cov_0.916667_g40792_i0 PRJNA1174207 41321 241 0.916667 2.20916747 Entamoeba gingivalis 38877 Evosea other_Eukaryota 438 1.4299999999999999e-118   NTclustered gi|2781670152|dbj|LC832224.1| 38877 g40792 i0 99.585 97.2946058091286 241 0 99 1 2 241 558 318 Entamoeba gingivalis ST1-1_human_Ishikawa_H118_2017 gene for 18S ribosomal RNA, partial sequence blastn 23448 438 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba gingivalis
2866304 2866304 PRJNA1174207_P_NODE_18943_length_326_cov_1.683794_g18414_i0 PRJNA1174207 18943 326 1.683794 5.48916844 Physarum cinereum 289951 Evosea other_Eukaryota 597 3.139999999999999e-166   NTclustered gi|224228205|dbj|AB435347.1| 289951 g18414 i0 99.693 100.328220858896 326 1 100 0 1 326 46 371 Physarum cinereum gene for small subunit ribosomal RNA, partial sequence, specimen_voucher: AK-06067 blastn 32707 597 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum cinereum
4142643 4142643 PRJNA1174207_P_NODE_33024_length_252_cov_1.290503_g32495_i0 PRJNA1174207 33024 252 1.290503 3.25206756 Acytostelium subglobosum 361139 Evosea other_Eukaryota 52.8 0.023   NTclustered gi|831754232|ref|XM_012892599.1| 1410327 g32495 i0 100 0.111111111111111 28 0 11 0 107 134 285 258 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum
8693316 8693316 PRJNA1174207_P_NODE_11927_length_431_cov_1.159218_g11400_i0 PRJNA1174207 11927 431 1.159218 4.99622958 Physarum 5790 Evosea other_Eukaryota 660 0   NTclustered gi|374255699|emb|HE614599.1| 289951 g11400 i0 94.432 59.5568445475638 431 20 100 3 1 431 655 1081 Physarum cinereum partial 18S rRNA gene, strain Idn-2 blastn 25669 660 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum cinereum
11794422 11794422 PRJNA1174207_P_NODE_37470_length_246_cov_0.890173_g36941_i0 PRJNA1174207 37470 246 0.890173 2.18982558 Entamoeba histolytica 5759 Evosea other_Eukaryota 156 1.65e-33   NTclustered gi|467633|emb|Z29969.1| 5759 g36941 i0 78.846 43.9268292682927 260 33 99 10 3 246 2274 2021 E.histolytica plasmid genes for ribosomal RNA and hemolysins HLY1, HLY5mc1 HLY5mc2 HLY4 blastn 10806 156 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica
14344338 14344338 PRJNA1174207_P_NODE_13112_length_404_cov_3.178248_g12584_i0 PRJNA1174207 13112 404 3.178248 12.84012192 Protostelium mycophagum 472931 Evosea other_Eukaryota 741 0   NTclustered gi|262262921|gb|FJ766464.1| 472931 g12584 i0 99.752 48.990099009901 404 1 100 0 1 404 596 999 Protostelium mycophagum strain KA-T15-2 small subunit ribosomal RNA gene, partial sequence blastn 19792 741 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
19441720 19441720 PRJNA1174207_P_NODE_32276_length_255_cov_1.681319_g31747_i0 PRJNA1174207 32276 255 1.681319 4.28736345 Stemonitopsis subcaespitosa 1048528 Evosea other_Eukaryota 326 1.2399999999999999e-84   NTclustered gi|426281760|gb|JX681133.1| 1048528 g31747 i0 90.04 82.2666666666667 251 25 98 0 1 251 244 494 Stemonitopsis subcaespitosa actin gene, partial cds blastn 20978 326 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Stemonitida Stemonitidae Stemonitopsis Stemonitopsis subcaespitosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;