RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1174207" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1174207 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5418411 5418411 PRJNA1174207_P_NODE_12505_length_417_cov_2.825581_g11978_i0 PRJNA1174207 12505 417 2.825581 11.78267277 uncultured Vannellidae 544561 Discosea other_Eukaryota 246 1.71e-60   NTclustered gi|724028230|gb|KP099889.1| 544561 g11978 i0 88.67 40.3741007194245 203 21 49 1 166 368 929 729 Uncultured Vannellidae clone b18 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 16836 246 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
5418873 5418873 PRJNA1174207_P_NODE_36285_length_247_cov_2.132184_g35756_i0 PRJNA1174207 36285 247 2.132184 5.26649448 Thecamoeba similis 242545 Discosea other_Eukaryota 193 1.26e-44   NTclustered gi|33946350|gb|AY294154.1| 242545 g35756 i0 88.608 26.4493927125506 158 18 64 0 90 247 1171 1014 Thecamoeba similis actin mRNA, complete cds blastn 6533 193 1 Eukaryota Amoebozoa   Discosea   Longamoebia Thecamoebida Thecamoeba Thecamoeba similis
6693634 6693634 PRJNA1174207_P_NODE_33166_length_251_cov_1.865169_g32637_i0 PRJNA1174207 33166 251 1.865169 4.68157419 Ripella sp. 805 1217113 Discosea other_Eukaryota 394 3.28e-105   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g32637 i0 95.238 88.2589641434263 252 7 99 5 1 250 48 296 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 22153 394 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
15618751 15618751 PRJNA1174207_P_NODE_9173_length_511_cov_1.305936_g8648_i0 PRJNA1174207 9173 511 1.305936 6.67333296 Vannella septentrionalis 197531 Discosea other_Eukaryota 167 1.7100000000000002e-36   NTclustered gi|300078499|gb|GU001161.1| 197531 g8648 i0 81.517 23.334637964775 211 32 41 5 156 363 2295 2089 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11924 167 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
18167213 18167213 PRJNA1174207_P_NODE_26255_length_280_cov_1.893720_g25726_i0 PRJNA1174207 26255 280 1.89372 5.302416 Cochliopodium larifeili 1017091 Discosea other_Eukaryota 512 9.85e-141   NTclustered gi|330902861|gb|JF298256.1| 1017091 g25726 i0 99.643 70.8464285714286 280 1 100 0 1 280 312 591 Cochliopodium larifeili clone 907 18S ribosomal RNA gene, partial sequence blastn 19837 512 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium larifeili
24541663 24541663 PRJNA1174207_P_NODE_30920_length_261_cov_1.265957_g30391_i0 PRJNA1174207 30920 261 1.265957 3.30414777 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 350 7.539999999999999e-92   NTclustered gi|33946346|gb|AY294152.1| 242541 g30391 i0 90.805 92.7509578544061 261 24 100 0 1 261 919 659 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 24208 350 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;