RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1174207" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1174207 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1040673 1040673 PRJNA1174207_P_NODE_32961_length_252_cov_1.709497_g32432_i0 PRJNA1174207 32961 252 1.709497 4.30793244 Rhizophydiales 451442 Fungi Fungi 466 6.89e-127   NTclustered gi|82398648|gb|DQ273837.1| 355339 g32432 i0 100 98.8373015873016 252 0 100 0 1 252 1570 1821 Rhizophydium sp. MP8 isolate AFTOL-ID 1538 28S ribosomal RNA gene, partial sequence blastn 24907 466 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Rhizophydiaceae Rhizophydium Rhizophydium sp. MP008
15068178 15068178 PRJNA1174207_P_NODE_20332_length_314_cov_1.713693_g19803_i0 PRJNA1174207 20332 314 1.713693 5.38099602 Rhizophydiales 451442 Fungi Fungi 575 1.4099999999999994e-159   NTclustered gi|82398648|gb|DQ273837.1| 355339 g19803 i0 99.682 98.5509554140127 314 1 100 0 1 314 351 38 Rhizophydium sp. MP8 isolate AFTOL-ID 1538 28S ribosomal RNA gene, partial sequence blastn 30945 580 0.991379310344828 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales Rhizophydiaceae Rhizophydium Rhizophydium sp. MP008

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;