RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1174207" and tax_phylum = "Candidatus Latescibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1174207 · 1 ✖

analysis 1

  • blastn · 1 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23268086 23268086 PRJNA1174207_P_NODE_41359_length_241_cov_0.916667_g40830_i0 PRJNA1174207 41359 241 0.916667 2.20916747 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 335 1.9199999999999993e-87   NTclustered gi|2891482399|emb|OZ220089.1| 2053570 g40830 i0 92.05 139.726141078838 239 18 99 1 1 238 2870552 2870314 MAG: Candidatus Latescibacterota bacterium isolate 4e2a754f-172e-45f6-b93c-83e01e84db49 genome assembly, chromosome: 1 blastn 33674 335 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;