RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1174207" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1174207 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10519129 10519129 PRJNA1174207_P_NODE_20949_length_310_cov_2.928270_g20420_i0 PRJNA1174207 20949 310 2.92827 9.077637 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 363 1.18e-95   NTclustered gi|2076447151|gb|CP075366.1| 2682144 g20420 i0 87.662 794.112903225806 308 32 99 2 3 310 893163 893464 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM8 chromosome blastn 246175 363 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
15068305 15068305 PRJNA1174207_P_NODE_28932_length_269_cov_1.489796_g28403_i0 PRJNA1174207 28932 269 1.489796 4.00755124 Chthonomonas 1077265 Bacteria Bacteria 326 1.31e-84   NTclustered gi|526641997|ref|NR_103994.1| 454171 g28403 i0 88.476 192.743494423792 269 31 100 0 1 269 1968 2236 Chthonomonas calidirosea strain T49 23S ribosomal RNA gene, complete sequence blastn 51848 326 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas calidirosea
23268075 23268075 PRJNA1174207_P_NODE_40839_length_242_cov_0.911243_g40310_i0 PRJNA1174207 40839 242 0.911243 2.20520806 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 185 2.06e-42   NTclustered gi|2874254000|emb|OY970325.1| 157466 g40310 i0 81.25 517.409090909091 240 36 98 9 5 240 1305914 1305680 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 125213 185 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;