RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1174207" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA1174207 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4868851 4868851 PRJNA1174207_P_NODE_43724_length_204_cov_4.251908_g43195_i0 PRJNA1174207 43724 204 4.251908 8.67389232 root 1 Root_unresolved Root_unresolved 287 4.479999999999999e-73   NTclustered gi|1169296931|gb|KY364701.1| 63676 g43195 i0 92.233 100.78431372549 206 10 99 6 1 203 4838 5040 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 20560 287 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
11794520 11794520 PRJNA1174207_P_NODE_42970_length_229_cov_2.205128_g42441_i0 PRJNA1174207 42970 229 2.205128 5.04974312 Chloromonas actinochloris 158501 Plants Plants 274 4.0099999999999997e-69   NTclustered gi|66864280|gb|DQ015735.1| 158501 g42441 i0 88.261 100.2096069869 230 25 100 2 1 229 1624 1396 Chloromonas actinochloris strain SAG 1.72 26S ribosomal RNA gene, partial sequence blastn 22948 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chloromonas Chloromonas actinochloris
13793835 13793835 PRJNA1174207_P_NODE_20671_length_311_cov_1.995798_g20142_i0 PRJNA1174207 20671 311 1.995798 6.20693178 Jaagichlorella 2304164 Plants Plants 564 3.02e-156   NTclustered gi|1802907783|gb|MT006204.1| 2704669 g20142 i0 99.357 99.7781350482315 311 2 100 0 1 311 3193 3503 Jaagichlorella nagensis strain FACHB-2415 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 31031 564 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Jaagichlorella Jaagichlorella nagensis
15068493 15068493 PRJNA1174207_P_NODE_43552_length_213_cov_4.600000_g43023_i0 PRJNA1174207 43552 213 4.6 9.798 Watanabeaceae 2981775 Plants Plants 383 5.8499999999999996e-102   NTclustered gi|1561005731|gb|MG493347.1| 167235 g43023 i0 99.061 99.6244131455399 213 2 100 0 1 213 109 321 Uncultured Trebouxiophyceae clone LSY2026 18S ribosomal RNA gene, partial sequence blastn 21220 383 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae       uncultured Trebouxiophyceae
16343185 16343185 PRJNA1174207_P_NODE_31433_length_258_cov_3.405405_g30904_i0 PRJNA1174207 31433 258 3.405405 8.7859449 root 1 Root_unresolved Root_unresolved 455 1.53e-123   NTclustered gi|1714003650|gb|MN243923.1| 3079 g30904 i0 98.456 100.352713178295 259 3 100 1 1 258 876 618 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 25891 455 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
23992668 23992668 PRJNA1174207_P_NODE_18199_length_333_cov_4.519231_g17670_i0 PRJNA1174207 18199 333 4.5192310000000004 15.04903923 Trebouxiophyceae 75966 Plants Plants 599 8.94e-167   NTclustered gi|148763239|gb|EF595524.1| 445995 g17670 i0 99.102 101.765765765766 334 2 100 1 1 333 1329 996 Heveochlorella hainangensis strain FGG01 18S ribosomal RNA gene, complete sequence blastn 33888 604 0.991721854304636 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Jaagichlorella Jaagichlorella hainangensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;