RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1169999" and tax_phylum = "Deinococcota"

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tax_superkingdom 1

tax_phylum 1

  • Deinococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1169999 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1589882 1589882 PRJNA1169999_P_NODE_1182_length_337_cov_1.291667_g1146_i0 PRJNA1169999 1182 337 1.291667 4.35291779 Deinococcus sp. NW-56 2080419 Bacteria Bacteria 459 1.6e-124   NTclustered gi|1339790003|gb|CP026516.1| 2080419 g1146 i0 92.523 84.7566765578635 321 23 95 1 1 320 2359965 2360285 Deinococcus sp. NW-56 chromosome, complete genome blastn 28563 459 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. NW-56
19441180 19441180 PRJNA1169999_P_NODE_1576_length_292_cov_1.269406_g1540_i0 PRJNA1169999 1576 292 1.269406 3.70666552 Deinococcus sp. NW-56 2080419 Bacteria Bacteria 479 1.0499999999999996e-130   NTclustered gi|1339790003|gb|CP026516.1| 2080419 g1540 i0 96.233 201.931506849315 292 11 100 0 1 292 544334 544043 Deinococcus sp. NW-56 chromosome, complete genome blastn 58964 479 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. NW-56
22717170 22717170 PRJNA1169999_P_NODE_1158_length_340_cov_2.344569_g1122_i0 PRJNA1169999 1158 340 2.344569 7.9715346 Deinococcus 1298 Bacteria Bacteria 617 2.5299999999999994e-172   NTclustered gi|1562202923|gb|MK446833.1| 47478 g1122 i0 99.412 106.232352941176 340 2 100 0 1 340 502 163 Deinococcus sp. strain NW-56 16S ribosomal RNA gene, partial sequence blastn 36119 617 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;