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contig_metadata

23 rows where analysis = "blastn", bioproject = "PRJNA1169999" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 23 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1169999 · 23 ✖

analysis 1

  • blastn · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
315248 315248 PRJNA1169999_P_NODE_3601_length_245_cov_0.895349_g3565_i0 PRJNA1169999 3601 245 0.895349 2.19360505 Mus musculus 10090 Chordata Chordata 453 5.1900000000000006e-123   NTclustered gi|46309632|gb|AC124119.7| 10090 g3565 i0 100 2 245 0 100 0 1 245 9724 9480 Mus musculus chromosome 12, clone RP23-220M9, complete sequence blastn 490 453 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
315249 315249 PRJNA1169999_P_NODE_3641_length_245_cov_0.895349_g3605_i0 PRJNA1169999 3641 245 0.895349 2.19360505 Mus musculus 10090 Chordata Chordata 453 5.1900000000000006e-123   NTclustered gi|2465538867|ref|NR_184843.1| 10090 g3605 i0 100 14.2244897959184 245 0 100 0 1 245 5481 5237 Mus musculus LMBR1 domain containing 2 (Lmbrd2), transcript variant 5, non-coding RNA blastn 3485 453 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
1589900 1589900 PRJNA1169999_P_NODE_3882_length_243_cov_0.905882_g3846_i0 PRJNA1169999 3882 243 0.905882 2.20129326 Leucoraja erinaceus 7782 Chordata Chordata 52.8 0.022   NTclustered gi|2497450692|ref|XM_055649065.1| 7782 g3846 i0 100 0.11522633744856 28 0 12 0 205 232 3145 3118 PREDICTED: Leucoraja erinacea adaptor related protein complex 1 subunit gamma 1 (ap1g1), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
1589907 1589907 PRJNA1169999_P_NODE_982_length_366_cov_3.365188_g946_i0 PRJNA1169999 982 366 3.365188 12.31658808 Mus musculus 10090 Chordata Chordata 671 0   NTclustered gi|15080560|gb|BC012020.1| 10090 g946 i0 99.727 97.8333333333333 366 1 100 0 1 366 1246 1611 Mus musculus cDNA clone IMAGE:4500967, with apparent retained intron blastn 35807 671 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
3590726 3590726 PRJNA1169999_P_NODE_2763_length_250_cov_1.740113_g2727_i0 PRJNA1169999 2763 250 1.740113 4.3502825 Mus 10088 Chordata Chordata 462 8.83e-126   NTclustered gi|2746383783|gb|PP914380.1| 10090 g2727 i0 100 100 250 0 100 0 1 250 1108 859 Mus musculus isolate SK2917 cytochrome b (CYTB) gene, partial cds; mitochondrial blastn 25000 462 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
4142116 4142116 PRJNA1169999_P_NODE_3524_length_246_cov_0.890173_g3488_i0 PRJNA1169999 3524 246 0.890173 2.18982558 Pleurodeles waltl 8319 Chordata Chordata 52.8 0.022   NTclustered gi|2833161351|ref|XM_069216681.1| 8319 g3488 i0 100 0.113821138211382 28 0 11 0 114 141 62 89 PREDICTED: Pleurodeles waltl mediator complex subunit 11 (MED11), transcript variant X6, mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
8693208 8693208 PRJNA1169999_P_NODE_2927_length_250_cov_0.870056_g2891_i0 PRJNA1169999 2927 250 0.870056 2.17514 Metazoa 33208 Chordata Chordata 56.5 0.002   NTclustered gi|2522859622|ref|XM_057502783.1| 143292 g2891 i0 100 2.464 30 0 12 0 128 157 214 243 PREDICTED: Manis pentadactyla uncharacterized LOC130683864 (LOC130683864), mRNA blastn 616 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis pentadactyla
9243129 9243129 PRJNA1169999_P_NODE_2768_length_250_cov_1.451977_g2732_i0 PRJNA1169999 2768 250 1.451977 3.6299425 Chionomys nivalis 269649 Chordata Chordata 52.8 0.023   NTclustered gi|2528526638|ref|XM_057756508.1| 269649 g2732 i0 100 0.112 28 0 11 0 172 199 2987 2960 PREDICTED: Chionomys nivalis SPT2 chromatin protein domain containing 1 (Spty2d1), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Chionomys Chionomys nivalis
9968395 9968395 PRJNA1169999_P_NODE_668_length_444_cov_0.827493_g632_i0 PRJNA1169999 668 444 0.827493 3.67406892 root 1 Root_unresolved Root_unresolved 821 0   NTclustered gi|49928|emb|V00718.1| 10090 g632 i0 100 99.8828828828829 444 0 100 0 1 444 474 31 Messenger RNA for mouse pancreatic alpha-amylase blastn 44348 821 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10518849 10518849 PRJNA1169999_P_NODE_1349_length_316_cov_1.555556_g1313_i0 PRJNA1169999 1349 316 1.555556 4.91555696 Pithys albifrons 265642 Chordata Chordata 52.8 0.03   NTclustered gi|2917143766|ref|XM_071567024.1| 3385563 g1313 i0 100 0.443037974683544 28 0 9 0 46 73 875 848 PREDICTED: Pithys albifrons albifrons myosin XVI (MYO16), transcript variant X5, mRNA blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Thamnophilidae Pithys Pithys albifrons
11243547 11243547 PRJNA1169999_P_NODE_2349_length_262_cov_1.629630_g2313_i0 PRJNA1169999 2349 262 1.62963 4.2696306 root 1 Root_unresolved Root_unresolved 484 1.99e-132   NTclustered gi|334688868|ref|NM_001199936.1| 10090 g2313 i0 100 98.5076335877863 262 0 100 0 1 262 599 338 Mus musculus major urinary protein 16 (Mup16), mRNA blastn 25809 484 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
16892298 16892298 PRJNA1169999_P_NODE_1494_length_299_cov_1.044248_g1458_i0 PRJNA1169999 1494 299 1.044248 3.12230152 Mus musculus 10090 Chordata Chordata 551 2.2499999999999998e-152   NTclustered gi|313482875|ref|NM_001199333.1| 10090 g1458 i0 100 103.752508361204 298 0 99 0 1 298 59 356 Mus musculus major urinary protein 18 (Mup18), mRNA blastn 31022 551 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
17618042 17618042 PRJNA1169999_P_NODE_2954_length_249_cov_1.750000_g2918_i0 PRJNA1169999 2954 249 1.75 4.3575 root 1 Root_unresolved Root_unresolved 460 3.16e-125   NTclustered gi|49928|emb|V00718.1| 10090 g2918 i0 100 100 249 0 100 0 1 249 940 1188 Messenger RNA for mouse pancreatic alpha-amylase blastn 24900 460 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
17618050 17618050 PRJNA1169999_P_NODE_754_length_419_cov_2.563584_g718_i0 PRJNA1169999 754 419 2.563584 10.74141696 Mus 10088 Chordata Chordata 769 0   NTclustered gi|846387676|dbj|LC061971.1| 10090 g718 i0 99.761 100 419 1 100 0 1 419 1642 1224 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_20 blastn 41900 769 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20166601 20166601 PRJNA1169999_P_NODE_1596_length_290_cov_2.119816_g1560_i0 PRJNA1169999 1596 290 2.119816 6.1474664 Mus 10088 Chordata Chordata 531 2.83e-146   NTclustered gi|846387586|dbj|LC061956.1| 10090 g1560 i0 99.655 100 290 1 100 0 1 290 2011 2300 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 29000 531 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20166603 20166603 PRJNA1169999_P_NODE_2236_length_267_cov_1.190722_g2200_i0 PRJNA1169999 2236 267 1.190722 3.17922774 Mus 10088 Chordata Chordata 488 1.5699999999999998e-133   NTclustered gi|756142290|gb|KP260515.1| 10090 g2200 i0 99.625 100 267 1 100 0 1 267 11213 10947 Mus musculus strain ME mitochondrion, complete genome blastn 26700 488 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20716573 20716573 PRJNA1169999_P_NODE_3217_length_248_cov_0.880000_g3181_i0 PRJNA1169999 3217 248 0.88 2.1824 Mus musculus 10090 Chordata Chordata 448 2.4499999999999996e-121   NTclustered gi|37590117|gb|BC058513.1| 10090 g3181 i0 99.194 57.1854838709677 248 2 100 0 1 248 1188 941 Mus musculus U1 small nuclear ribonucleoprotein polypeptide A, mRNA (cDNA clone IMAGE:6822369), partial cds blastn 14182 448 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20716581 20716581 PRJNA1169999_P_NODE_4057_length_242_cov_0.911243_g4021_i0 PRJNA1169999 4057 242 0.911243 2.20520806 Sus scrofa 9823 Chordata Chordata 448 2.3799999999999995e-121   NTclustered gi|115545698|dbj|AK230813.1| 9823 g4021 i0 100 100.057851239669 242 0 100 0 1 242 2203 1962 Sus scrofa mRNA, clone:AMP010047H05, expressed in alveolar macrophage blastn 24214 448 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
21442198 21442198 PRJNA1169999_P_NODE_3877_length_243_cov_0.994118_g3841_i0 PRJNA1169999 3877 243 0.994118 2.41570674 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 56.5 0.002   NTclustered gi|2518789575|ref|XM_057408441.1| 35540 g3841 i0 86.792 6.78600823045267 53 4 21 3 92 141 895 843 PREDICTED: Pezoporus wallicus Snf2 related CREBBP activator protein (SRCAP), partial mRNA blastn 1649 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Pezoporus Pezoporus wallicus
21991834 21991834 PRJNA1169999_P_NODE_2518_length_256_cov_1.480874_g2482_i0 PRJNA1169999 2518 256 1.480874 3.79103744 Gallus gallus 9031 Chordata Chordata 462 9.07e-126   NTclustered gi|149893842|gb|AC188809.5| 9031 g2482 i0 99.222 213.3515625 257 1 100 1 1 256 77569 77313 Gallus gallus BAC clone CH261-16A5 from chromosome z, complete sequence blastn 54618 462 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
21991840 21991840 PRJNA1169999_P_NODE_3738_length_244_cov_0.900585_g3702_i0 PRJNA1169999 3738 244 0.900585 2.1974274 Mus musculus 10090 Chordata Chordata 270 5.58e-68   NTclustered gi|20068551|emb|AL606963.5| 10090 g3702 i0 87.288 9.93032786885246 236 30 97 0 1 236 30951 31186 Mouse DNA sequence from clone RP23-282N17 on chromosome 4, complete sequence blastn 2423 270 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22717179 22717179 PRJNA1169999_P_NODE_958_length_371_cov_1.026846_g922_i0 PRJNA1169999 958 371 1.026846 3.80959866 root 1 Root_unresolved Root_unresolved 686 0   NTclustered gi|29612570|gb|BC049971.1| 10090 g922 i0 100 89.4339622641509 371 0 100 0 1 371 1023 653 Mus musculus albumin, mRNA (cDNA clone MGC:59023 IMAGE:4161986), complete cds blastn 33180 686 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
23267424 23267424 PRJNA1169999_P_NODE_4239_length_241_cov_0.916667_g4203_i0 PRJNA1169999 4239 241 0.916667 2.20916747 Mus musculus 10090 Chordata Chordata 444 3.06e-120   NTclustered gi|34980908|gb|BC057186.1| 10090 g4203 i0 100 98.5767634854772 240 0 99 0 2 241 2369 2130 Mus musculus plasminogen, mRNA (cDNA clone MGC:68234 IMAGE:5097123), complete cds blastn 23757 444 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;