RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1168532" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1168532 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7968502 7968502 PRJNA1168532_S_NODE_318607_length_162_cov_1.579832_g315664_i0 PRJNA1168532 318607 162 1.579832 2.55932784 Mycoplasma wenyonii 65123 Bacteria Bacteria 300 4.36e-77   NTclustered gi|395455868|gb|CP003703.1| 1197325 g315664 i0 100 1 162 0 100 0 1 162 447386 447225 Mycoplasma wenyonii str. Massachusetts, complete genome blastn 162 300 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii
20716532 20716532 PRJNA1168532_S_NODE_254117_length_188_cov_1.620690_g251174_i0 PRJNA1168532 254117 188 1.62069 3.0468972 Mycoplasma ovis 171632 Bacteria Bacteria 187 4.2299999999999985e-43   NTclustered gi|566058721|gb|CP006935.1| 1415773 g251174 i0 84.574 1 188 29 100 0 1 188 59113 59300 Mycoplasma ovis str. Michigan, complete genome blastn 188 187 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma ovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;