RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1168532" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA1168532 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14344157 14344157 PRJNA1168532_S_NODE_179232_length_234_cov_1.937173_g176289_i0 PRJNA1168532 179232 234 1.937173 4.53298482 Fusobacterium periodonticum 860 Bacteria Bacteria 433 6.41e-117   NTclustered gi|645319974|ref|NR_117292.1| 860 g176289 i0 100 128 234 0 100 0 1 234 81 314 Fusobacterium periodonticum strain ATCC 33693 16S ribosomal RNA, partial sequence blastn 29952 433 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
20716537 20716537 PRJNA1168532_S_NODE_279157_length_177_cov_0.925373_g276214_i0 PRJNA1168532 279157 177 0.925373 1.63791021 Leptotrichia sp. oral taxon 221 712362 Bacteria Bacteria 311 2.23e-80   NTclustered gi|2028889048|gb|CP072378.1| 712362 g276214 i0 98.305 260.480225988701 177 3 100 0 1 177 26769 26593 Leptotrichia sp. oral taxon 221 strain F0705 chromosome, complete genome blastn 46105 311 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp. oral taxon 221

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;