RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1168532" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1168532 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11793786 11793786 PRJNA1168532_S_NODE_248590_length_191_cov_1.412162_g245647_i0 PRJNA1168532 248590 191 1.412162 2.69722942 uncultured Prevotellamassilia sp. 1926676 Bacteria Bacteria 315 1.9e-81   NTclustered gi|1997760563|emb|LR994473.1| 1926676 g245647 i0 96.335 404.910994764398 191 7 100 0 1 191 1236379 1236569 uncultured Prevotellamassilia sp. isolate Prevotellamassilia canine HQ MAG genome assembly, chromosome: 1 blastn 77338 315 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotellamassilia uncultured Prevotellamassilia sp.
16342753 16342753 PRJNA1168532_S_NODE_141193_length_269_cov_1.238938_g138250_i0 PRJNA1168532 141193 269 1.238938 3.33274322 Sediminibacterium 504481 Bacteria Bacteria 392 1.28e-104   NTclustered gi|2285221741|dbj|AP026683.1| 575378 g138250 i0 92.963 54.7769516728625 270 18 100 1 1 269 55376 55645 Sediminibacterium sp. TEGAF015 DNA, complete genome blastn 14735 392 1 Bacteria FCB group Pseudomonadati Bacteroidota Chitinophagia Chitinophagales Chitinophagaceae Sediminibacterium Sediminibacterium sp. TEGAF015
20716542 20716542 PRJNA1168532_S_NODE_296497_length_170_cov_1.322835_g293554_i0 PRJNA1168532 296497 170 1.322835 2.2488195 Riemerella anatipestifer 34085 Bacteria Bacteria 200 4.8e-47   NTclustered gi|392495350|gb|JQ664681.1| 34085 g293554 i0 88.889 0.952941176470588 162 18 95 0 8 169 21 182 Riemerella anatipestifer strain X23-4N aminoglycoside-3'-O-phosphotransferase (aph) gene, partial cds blastn 162 200 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Riemerella Riemerella anatipestifer

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;