contig_metadata
11 rows where analysis = "blastn", bioproject = "PRJNA1167252" and tax_phylum = "Thermodesulfobacteriota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2865451 | 2865451 | PRJNA1167252_P_NODE_27183_length_246_cov_0.901734_g26910_i0 | PRJNA1167252 | 27183 | 246 | 0.901734 | 2.21826564 | Desulfovibrio aminophilus | 81425 | Bacteria | Bacteria | 333 | 7.089999999999999e-87 | NTclustered | gi|2908463109|gb|CP168306.1| | 81425 | g26910 | i0 | 91.057 | 23.9430894308943 | 246 | 22 | 100 | 0 | 1 | 246 | 8530 | 8775 | MAG: Desulfovibrio aminophilus isolate Co chromosome, complete genome | blastn | 5890 | 333 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfovibrionia | Desulfovibrionales | Desulfovibrionaceae | Desulfovibrio | Desulfovibrio aminophilus | ||
| 5417639 | 5417639 | PRJNA1167252_P_NODE_24065_length_251_cov_0.876404_g23792_i0 | PRJNA1167252 | 24065 | 251 | 0.876404 | 2.19977404 | Desulfosarcina widdelii | 947919 | Bacteria | Bacteria | 370 | 5.53e-98 | NTclustered | gi|1773416083|dbj|AP021875.1| | 947919 | g23792 | i0 | 93.227 | 1.95219123505976 | 251 | 17 | 100 | 0 | 1 | 251 | 5520102 | 5520352 | Desulfosarcina widdelii PP31 DNA, complete genome | blastn | 490 | 370 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobacteria | Desulfobacterales | Desulfosarcinaceae | Desulfosarcina | Desulfosarcina widdelii | ||
| 6142771 | 6142771 | PRJNA1167252_P_NODE_21945_length_258_cov_0.929730_g21672_i0 | PRJNA1167252 | 21945 | 258 | 0.92973 | 2.3987034 | Thermodesulfobacteriota | 200940 | Bacteria | Bacteria | 455 | 1.53e-123 | NTclustered | gi|779731694|gb|CP010430.1| | 35554 | g21672 | i0 | 98.45 | 15.9031007751938 | 258 | 4 | 100 | 0 | 1 | 258 | 3971907 | 3971650 | Geobacter sulfurreducens strain AM-1 genome | blastn | 4103 | 455 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Geobacterales | Geobacteraceae | Geobacter | Geobacter sulfurreducens | ||
| 6692550 | 6692550 | PRJNA1167252_P_NODE_28146_length_244_cov_0.912281_g27873_i0 | PRJNA1167252 | 28146 | 244 | 0.912281 | 2.22596564 | Desulfobulbus propionicus | 894 | Bacteria | Bacteria | 451 | 1.86e-122 | NTclustered | gi|320120648|gb|CP002364.1| | 577650 | g27873 | i0 | 100 | 1 | 244 | 0 | 100 | 0 | 1 | 244 | 2175259 | 2175016 | Desulfobulbus propionicus DSM 2032, complete genome | blastn | 244 | 451 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobulbia | Desulfobulbales | Desulfobulbaceae | Desulfobulbus | Desulfobulbus propionicus | ||
| 7417700 | 7417700 | PRJNA1167252_P_NODE_18386_length_284_cov_2.156398_g18113_i0 | PRJNA1167252 | 18386 | 284 | 2.156398 | 6.12417032 | Thermodesulfobacteriota | 200940 | Bacteria | Bacteria | 272 | 1.8499999999999998e-68 | NTclustered | gi|470488362|ref|NR_076865.1| | 60893 | g18113 | i0 | 86.207 | 219.700704225352 | 261 | 25 | 90 | 10 | 1 | 257 | 28 | 281 | Desulfobacca acetoxidans strain ASRB2 23S ribosomal RNA gene, complete sequence | blastn | 62395 | 272 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobaccia | Desulfobaccales | Desulfobaccaceae | Desulfobacca | Desulfobacca acetoxidans | ||
| 9968084 | 9968084 | PRJNA1167252_P_NODE_26968_length_246_cov_0.901734_g26695_i0 | PRJNA1167252 | 26968 | 246 | 0.901734 | 2.21826564 | Geomonas | 2651583 | Bacteria | Bacteria | 167 | 7.61e-37 | NTclustered | gi|2233265061|gb|CP096574.1| | 2740185 | g26695 | i0 | 79.116 | 12.7967479674797 | 249 | 46 | 100 | 6 | 1 | 246 | 376199 | 376444 | Geomonas paludis strain RG22 chromosome, complete genome | blastn | 3148 | 167 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Geobacterales | Geobacteraceae | Geomonas | Geomonas paludis | ||
| 13068235 | 13068235 | PRJNA1167252_P_NODE_26551_length_247_cov_0.896552_g26278_i0 | PRJNA1167252 | 26551 | 247 | 0.896552 | 2.21448344 | Desulfobulbus propionicus | 894 | Bacteria | Bacteria | 457 | 4.05e-124 | NTclustered | gi|320120648|gb|CP002364.1| | 577650 | g26278 | i0 | 100 | 2.34008097165992 | 247 | 0 | 100 | 0 | 1 | 247 | 1252181 | 1252427 | Desulfobulbus propionicus DSM 2032, complete genome | blastn | 578 | 457 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfobulbia | Desulfobulbales | Desulfobulbaceae | Desulfobulbus | Desulfobulbus propionicus | ||
| 16891619 | 16891619 | PRJNA1167252_P_NODE_22974_length_253_cov_0.866667_g22701_i0 | PRJNA1167252 | 22974 | 253 | 0.866667 | 2.19266751 | Syntrophus buswellii | 43774 | Bacteria | Bacteria | 433 | 7.02e-117 | NTclustered | gi|2869717242|gb|CP175563.1| | 43774 | g22701 | i0 | 97.619 | 2.75098814229249 | 252 | 6 | 99 | 0 | 1 | 252 | 146523 | 146272 | Syntrophus buswellii strain DM-2 chromosome, complete genome | blastn | 696 | 433 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Syntrophia | Syntrophales | Syntrophaceae | Syntrophus | Syntrophus buswellii | ||
| 18166257 | 18166257 | PRJNA1167252_P_NODE_27215_length_246_cov_0.867052_g26942_i0 | PRJNA1167252 | 27215 | 246 | 0.867052 | 2.13294792 | Desulfoglaeba alkanexedens | 361111 | Bacteria | Bacteria | 353 | 5.44e-93 | NTclustered | gi|1649181537|gb|CP040098.1| | 980445 | g26942 | i0 | 92.713 | 1.00406504065041 | 247 | 14 | 100 | 2 | 1 | 246 | 210173 | 210416 | Desulfoglaeba alkanexedens ALDC chromosome, complete genome | blastn | 247 | 353 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Syntrophobacteria | Syntrophobacterales | Syntrophobacteraceae | Desulfoglaeba | Desulfoglaeba alkanexedens | ||
| 19440488 | 19440488 | PRJNA1167252_P_NODE_23876_length_251_cov_0.876404_g23603_i0 | PRJNA1167252 | 23876 | 251 | 0.876404 | 2.19977404 | Citrifermentans bemidjiense | 225194 | Bacteria | Bacteria | 147 | 1.01e-30 | NTclustered | gi|197085762|gb|CP001124.1| | 404380 | g23603 | i0 | 78.571 | 3.32669322709163 | 224 | 47 | 89 | 1 | 29 | 251 | 2952236 | 2952459 | Geobacter bemidjiensis Bem, complete genome | blastn | 835 | 147 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Geobacterales | Geobacteraceae | Citrifermentans | Citrifermentans bemidjiense | ||
| 21991278 | 21991278 | PRJNA1167252_P_NODE_26598_length_247_cov_0.896552_g26325_i0 | PRJNA1167252 | 26598 | 247 | 0.896552 | 2.21448344 | Geobacter benzoatilyticus | 2815309 | Bacteria | Bacteria | 124 | 4.66e-24 | NTclustered | gi|2004017374|gb|CP071382.1| | 2815309 | g26325 | i0 | 97.26 | 89.5101214574899 | 73 | 2 | 30 | 0 | 175 | 247 | 1573209 | 1573137 | Geobacter benzoatilyticus strain Jerry-YX chromosome, complete genome | blastn | 22109 | 124 | 1 | Bacteria | Pseudomonadati | Thermodesulfobacteriota | Desulfuromonadia | Geobacterales | Geobacteraceae | Geobacter | Geobacter benzoatilyticus |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;