RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1167252" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1167252 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9242492 9242492 PRJNA1167252_P_NODE_23908_length_251_cov_0.876404_g23635_i0 PRJNA1167252 23908 251 0.876404 2.19977404 Helicobacter cinaedi 213 Bacteria Bacteria 464 2.47e-126   NTclustered gi|2157106196|dbj|AP025196.1| 213 g23635 i0 100 9.40637450199203 251 0 100 0 1 251 806819 806569 Helicobacter cinaedi T36 DNA, complete genome blastn 2361 464 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi
13068200 13068200 PRJNA1167252_P_NODE_25151_length_249_cov_0.886364_g24878_i0 PRJNA1167252 25151 249 0.886364 2.20704636 Helicobacter cinaedi 213 Bacteria Bacteria 449 6.840000000000001e-122   NTclustered gi|2157108461|dbj|AP025204.1| 213 g24878 i0 99.197 10.855421686747 249 2 100 0 1 249 1770024 1769776 Helicobacter cinaedi 94105 DNA, complete genome blastn 2703 449 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi
13793130 13793130 PRJNA1167252_P_NODE_15631_length_310_cov_1.316456_g15358_i0 PRJNA1167252 15631 310 1.316456 4.0810136 Helicobacter 209 Bacteria Bacteria 322 2e-83   NTclustered gi|1540242994|emb|LR134509.1| 35818 g15358 i0 85.621 63.5225806451613 306 44 99 0 5 310 534873 535178 Helicobacter pullorum strain NCTC13154 genome assembly, chromosome: 1 blastn 19692 322 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pullorum
16891629 16891629 PRJNA1167252_P_NODE_23494_length_252_cov_0.871508_g23221_i0 PRJNA1167252 23494 252 0.871508 2.19620016 Helicobacter cinaedi 213 Bacteria Bacteria 438 1.5e-118   NTclustered gi|2157108461|dbj|AP025204.1| 213 g23221 i0 98.016 11.2380952380952 252 5 100 0 1 252 661434 661685 Helicobacter cinaedi 94105 DNA, complete genome blastn 2832 438 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi
20715923 20715923 PRJNA1167252_P_NODE_24637_length_250_cov_0.881356_g24364_i0 PRJNA1167252 24637 250 0.881356 2.20339 Helicobacter cinaedi 213 Bacteria Bacteria 457 4.1099999999999985e-124   NTclustered gi|2157106196|dbj|AP025196.1| 213 g24364 i0 99.6 1 250 1 100 0 1 250 345052 345301 Helicobacter cinaedi T36 DNA, complete genome blastn 250 457 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter cinaedi
21991280 21991280 PRJNA1167252_P_NODE_26658_length_247_cov_0.890805_g26385_i0 PRJNA1167252 26658 247 0.890805 2.20028835 Sulfurovum sp. NBC37-1 387093 Bacteria Bacteria 224 4.469999999999999e-54   NTclustered gi|151423458|dbj|AP009179.1| 387093 g26385 i0 83.065 1.00404858299595 248 40 100 2 1 247 179312 179558 Sulfurovum sp. NBC37-1 DNA, complete genome blastn 248 224 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurovaceae Sulfurovum Sulfurovum sp. NBC37-1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;