RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1166865" and tax_phylum = "Nitrospirota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1166865 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5417035 5417035 PRJNA1166865_P_NODE_86725_length_245_cov_0.895349_g86484_i0 PRJNA1166865 86725 245 0.895349 2.19360505 Nitrospira sp. 70125 Bacteria Bacteria 403 5.299999999999998e-108   NTclustered gi|2194436381|gb|CP092080.1| 70125 g86484 i0 96.341 1.00408163265306 246 7 100 2 1 245 2050340 2050096 MAG: Nitrospira sp. isolate UBC1 chromosome blastn 246 403 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
7966567 7966567 PRJNA1166865_P_NODE_58607_length_289_cov_1.287037_g58366_i0 PRJNA1166865 58607 289 1.287037 3.71953693 Nitrospira moscoviensis 42253 Bacteria Bacteria 451 2.26e-122   NTclustered gi|922305621|gb|CP011801.1| 42253 g58366 i0 94.81 37.6470588235294 289 15 100 0 1 289 1277752 1277464 Nitrospira moscoviensis strain NSP M-1, complete genome blastn 10880 451 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira moscoviensis
13067376 13067376 PRJNA1166865_P_NODE_78591_length_249_cov_1.750000_g78350_i0 PRJNA1166865 78591 249 1.75 4.3575 Nitrospira sp. 70125 Bacteria Bacteria 233 7.5e-57   NTclustered gi|2194428397|gb|CP092079.1| 70125 g78350 i0 83.6 1.00401606425703 250 40 100 1 1 249 1817519 1817270 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 250 233 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
23266050 23266050 PRJNA1166865_P_NODE_83739_length_247_cov_0.885057_g83498_i0 PRJNA1166865 83739 247 0.885057 2.18609079 Nitrospira sp. 70125 Bacteria Bacteria 296 9.34e-76   NTclustered gi|2194428397|gb|CP092079.1| 70125 g83498 i0 88.797 47.2105263157895 241 27 98 0 7 247 1812809 1812569 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 11661 296 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;