contig_metadata
13 rows where analysis = "blastn", bioproject = "PRJNA1166865" and tax_phylum = "Myxococcota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 312318 | 312318 | PRJNA1166865_P_NODE_19761_length_483_cov_1.617073_g19520_i0 | PRJNA1166865 | 19761 | 483 | 1.617073 | 7.81046259 | Sandaracinus amylolyticus | 927083 | Bacteria | Bacteria | 52.8 | 0.047 | NTclustered | gi|2183633570|gb|CP070225.1| | 927083 | g19520 | i0 | 100 | 0.0579710144927536 | 28 | 0 | 6 | 0 | 314 | 341 | 6750558 | 6750531 | Sandaracinus strain MSr10575 (SBSa001) chromosome, complete sequence | blastn | 28 | 52.8 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Sandaracinaceae | Sandaracinus | Sandaracinus amylolyticus | |||
| 312517 | 312517 | PRJNA1166865_P_NODE_27341_length_411_cov_1.822485_g27100_i0 | PRJNA1166865 | 27341 | 411 | 1.822485 | 7.49041335 | Labilithrix luteola | 1391654 | Bacteria | Bacteria | 392 | 2.05e-104 | NTclustered | gi|913610804|gb|CP012333.1| | 1391654 | g27100 | i0 | 84.223 | 268.549878345499 | 412 | 56 | 99 | 9 | 5 | 411 | 3942197 | 3941790 | Labilithrix luteola strain DSM 27648, complete genome | blastn | 110374 | 392 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Labilitrichaceae | Labilithrix | Labilithrix luteola | |||
| 313876 | 313876 | PRJNA1166865_P_NODE_82881_length_247_cov_0.885057_g82640_i0 | PRJNA1166865 | 82881 | 247 | 0.885057 | 2.18609079 | Sorangium cellulosum | 56 | Bacteria | Bacteria | 58.4 | 4.8e-4 | NTclustered | gi|161158851|emb|AM746676.1| | 448385 | g82640 | i0 | 97.059 | 0.137651821862348 | 34 | 1 | 14 | 0 | 73 | 106 | 483366 | 483333 | Sorangium cellulosum 'So ce 56' complete genome | blastn | 34 | 58.4 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Sorangium | Sorangium cellulosum | |||
| 4140665 | 4140665 | PRJNA1166865_P_NODE_81064_length_248_cov_0.880000_g80823_i0 | PRJNA1166865 | 81064 | 248 | 0.88 | 2.1824 | Myxococcus xanthus | 34 | Bacteria | Bacteria | 193 | 1.27e-44 | NTclustered | gi|1691485482|gb|CP017169.1| | 34 | g80823 | i0 | 84.264 | 3.97177419354839 | 197 | 31 | 79 | 0 | 49 | 245 | 2875712 | 2875908 | Myxococcus xanthus strain GH3.5.6c2 chromosome, complete genome | blastn | 985 | 193 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Myxococcaceae | Myxococcus | Myxococcus xanthus | ||
| 6142504 | 6142504 | PRJNA1166865_P_NODE_75665_length_251_cov_0.865169_g75424_i0 | PRJNA1166865 | 75665 | 251 | 0.865169 | 2.17157419 | Myxococcaceae | 31 | Bacteria | Bacteria | 206 | 1.65e-48 | NTclustered | gi|2318731907|gb|CP104804.1| | 34 | g75424 | i0 | 89.571 | 63.6414342629482 | 163 | 15 | 65 | 2 | 1 | 162 | 7897698 | 7897537 | Myxococcus xanthus strain DK1050 chromosome | blastn | 15974 | 206 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Myxococcaceae | Myxococcus | Myxococcus xanthus | ||
| 9241611 | 9241611 | PRJNA1166865_P_NODE_73888_length_253_cov_1.711111_g73647_i0 | PRJNA1166865 | 73888 | 253 | 1.711111 | 4.32911083 | Anaeromyxobacter paludicola | 2918171 | Bacteria | Bacteria | 154 | 6.12e-33 | NTclustered | gi|2199271117|dbj|AP025592.1| | 2918171 | g73647 | i0 | 86.014 | 41.2134387351779 | 143 | 20 | 57 | 0 | 1 | 143 | 304933 | 305075 | Anaeromyxobacter paludicola DNA, complete genome | blastn | 10427 | 154 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Anaeromyxobacteraceae | Anaeromyxobacter | Anaeromyxobacter paludicola | ||
| 10516587 | 10516587 | PRJNA1166865_P_NODE_44669_length_328_cov_1.615686_g44428_i0 | PRJNA1166865 | 44669 | 328 | 1.615686 | 5.29945008 | Pendulispora albinea | 2741071 | Bacteria | Bacteria | 206 | 2.24e-48 | NTclustered | gi|2698035964|gb|CP089984.1| | 2741071 | g44428 | i0 | 78.931 | 35.3384146341463 | 318 | 55 | 95 | 11 | 17 | 328 | 1599287 | 1598976 | Pendulispora albinea strain MSr11954 chromosome, complete genome | blastn | 11591 | 206 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Pendulisporaceae | Pendulispora | Pendulispora albinea | ||
| 11791213 | 11791213 | PRJNA1166865_P_NODE_31470_length_384_cov_2.360129_g31229_i0 | PRJNA1166865 | 31470 | 384 | 2.360129 | 9.06289536 | Minicystis rosea | 888845 | Bacteria | Bacteria | 67.6 | 1.31e-6 | NTclustered | gi|1127353251|gb|CP016211.1| | 888845 | g31229 | i0 | 93.333 | 0.1171875 | 45 | 3 | 12 | 0 | 304 | 348 | 1826865 | 1826821 | Minicystis rosea strain DSM 24000 chromosome, complete genome | blastn | 45 | 67.6 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Minicystis | Minicystis rosea | |||
| 11791392 | 11791392 | PRJNA1166865_P_NODE_38650_length_350_cov_1.111913_g38409_i0 | PRJNA1166865 | 38650 | 350 | 1.111913 | 3.8916955 | Nannocystis punicea | 2995304 | Bacteria | Bacteria | 307 | 6.390000000000001e-79 | NTclustered | gi|2415023655|gb|CP114040.1| | 2995304 | g38409 | i0 | 85.911 | 70.3685714285714 | 291 | 38 | 83 | 3 | 16 | 305 | 5377565 | 5377277 | Nannocystis poenicansa strain FL3 chromosome, complete genome | blastn | 24629 | 307 | 1 | Bacteria | Pseudomonadati | Myxococcota | Nannocystales | Nannocystaceae | Nannocystis | Nannocystis punicea | |||
| 14342709 | 14342709 | PRJNA1166865_P_NODE_78392_length_250_cov_0.870056_g78151_i0 | PRJNA1166865 | 78392 | 250 | 0.870056 | 2.17514 | Sorangium cellulosum | 56 | Bacteria | Bacteria | 198 | 2.75e-46 | NTclustered | gi|1566495190|gb|CP012670.1| | 56 | g78151 | i0 | 81.028 | 1.012 | 253 | 45 | 100 | 1 | 1 | 250 | 8905302 | 8905050 | Sorangium cellulosum strain So ceGT47 chromosome, complete genome | blastn | 253 | 198 | 1 | Bacteria | Pseudomonadati | Myxococcota | Polyangiales | Polyangiaceae | Sorangium | Sorangium cellulosum | |||
| 15616777 | 15616777 | PRJNA1166865_P_NODE_88613_length_244_cov_0.900585_g88372_i0 | PRJNA1166865 | 88613 | 244 | 0.900585 | 2.1974274 | Anaeromyxobacter paludicola | 2918171 | Bacteria | Bacteria | 255 | 1.5600000000000001e-63 | NTclustered | gi|2199271117|dbj|AP025592.1| | 2918171 | g88372 | i0 | 89.552 | 6.49180327868852 | 201 | 21 | 82 | 0 | 38 | 238 | 2013419 | 2013619 | Anaeromyxobacter paludicola DNA, complete genome | blastn | 1584 | 255 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Anaeromyxobacteraceae | Anaeromyxobacter | Anaeromyxobacter paludicola | ||
| 17617289 | 17617289 | PRJNA1166865_P_NODE_20894_length_470_cov_1.163728_g20653_i0 | PRJNA1166865 | 20894 | 470 | 1.163728 | 5.4695216 | Bacteria | 2 | Bacteria | Bacteria | 52.8 | 0.046 | NTclustered | gi|2619762464|gb|CP137851.1| | 83451 | g20653 | i0 | 96.774 | 0.125531914893617 | 31 | 1 | 7 | 0 | 277 | 307 | 10446644 | 10446674 | Archangium violaceum strain KYC5002 chromosome, complete genome | blastn | 59 | 52.8 | 1 | Bacteria | Pseudomonadati | Myxococcota | Myxococcia | Myxococcales | Archangiaceae | Archangium | Archangium violaceum | ||
| 21990124 | 21990124 | PRJNA1166865_P_NODE_64378_length_276_cov_1.137931_g64137_i0 | PRJNA1166865 | 64378 | 276 | 1.137931 | 3.14068956 | Nannocystis punicea | 2995304 | Bacteria | Bacteria | 56.5 | 0.002 | NTclustered | gi|2415023655|gb|CP114040.1| | 2995304 | g64137 | i0 | 100 | 0.108695652173913 | 30 | 0 | 11 | 0 | 120 | 149 | 5628446 | 5628417 | Nannocystis poenicansa strain FL3 chromosome, complete genome | blastn | 30 | 56.5 | 1 | Bacteria | Pseudomonadati | Myxococcota | Nannocystales | Nannocystaceae | Nannocystis | Nannocystis punicea |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;