RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1166865" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1166865 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4140544 4140544 PRJNA1166865_P_NODE_76044_length_251_cov_0.865169_g75803_i0 PRJNA1166865 76044 251 0.865169 2.17157419 Giardia duodenalis 5741 Fornicata other_Eukaryota 58.4 4.89e-4   NTclustered gi|159116248|ref|XM_001708294.1| 5741 g75803 i0 97.059 0.135458167330677 34 1 14 0 122 155 267 234 Giardia intestinalis Coiled-coil protein (GL50803_0017574), partial mRNA blastn 34 58.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
5415687 5415687 PRJNA1166865_P_NODE_31965_length_382_cov_0.996764_g31724_i0 PRJNA1166865 31965 382 0.996764 3.80763848 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 385 3.16e-102   NTclustered gi|339759363|dbj|AB600294.1| 201153 g31724 i0 89.701 76.5523560209424 301 31 79 0 82 382 1 301 Carpediemonas membranifera gene for alpha-tubulin, partial cds, strain: BICM blastn 29243 385 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;