RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1166865" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1166865 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18165640 18165640 PRJNA1166865_P_NODE_90095_length_243_cov_1.358824_g89854_i0 PRJNA1166865 90095 243 1.358824 3.30194232 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 60.2 1.31e-4   NTclustered gi|2814788336|emb|OY760867.2| 2026734 g89854 i0 97.143 0.860082304526749 35 1 14 0 73 107 3495592 3495558 MAG: Dehalococcoidia bacterium isolate ec36dd00-29ce-491f-9a3f-6816ace52b4b genome assembly, chromosome: 1 blastn 209 60.2 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
23265540 23265540 PRJNA1166865_P_NODE_61999_length_281_cov_1.475962_g61758_i0 PRJNA1166865 61999 281 1.475962 4.14745322 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 58.4 5.57e-4   NTclustered gi|2874253725|emb|OY969567.1| 1672391 g61758 i0 97.059 0.120996441281139 34 1 12 0 162 195 1333194 1333161 MAG: uncultured Chloroflexia bacterium isolate MFD01561.bin.c.1 genome assembly, chromosome: 1 blastn 34 58.4 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;