RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1166865" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1166865 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1587523 1587523 PRJNA1166865_P_NODE_43162_length_333_cov_1.776923_g42921_i0 PRJNA1166865 43162 333 1.776923 5.91715359 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 355 2.14e-93   NTclustered gi|657012367|gb|KF302531.1| 2850 g42921 i0 85.928 8.82282282282282 334 45 100 2 1 333 48 380 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 2938 355 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
1587676 1587676 PRJNA1166865_P_NODE_4862_length_925_cov_2.150235_g4695_i0 PRJNA1166865 4862 925 2.150235 19.88967375 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 573 1.6099999999999996e-158   NTclustered gi|223997787|ref|XM_002288531.1| 296543 g4695 i0 81.909 63.4475675675676 702 106 74 15 206 894 1721 1028 Thalassiosira pseudonana CCMP1335 heat shock protein/chaperone (hsp70_4), mRNA blastn 58689 573 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana
13066931 13066931 PRJNA1166865_P_NODE_6011_length_848_cov_1.380645_g5820_i0 PRJNA1166865 6011 848 1.380645 11.7078696 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 654 0   NTclustered gi|54111261|gb|AC151921.1| 2850 g5820 i0 81.182 4.4186320754717 829 142 97 12 1 825 13358 12540 Phaeodactylum tricornutum clone JGIAHOK-13P5, complete sequence blastn 3747 654 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
15616232 15616232 PRJNA1166865_P_NODE_6393_length_826_cov_11.361222_g6198_i0 PRJNA1166865 6393 826 11.361222 93.84369372 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 433 2.539999999999999e-116   NTclustered gi|657012367|gb|KF302531.1| 2850 g6198 i0 88.187 62.0205811138015 364 41 44 2 217 579 385 23 Phaeodactylum tricornutum clone C443 40S ribosomal protein mRNA, partial cds blastn 51229 433 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
23265579 23265579 PRJNA1166865_P_NODE_63539_length_277_cov_6.098039_g63298_i0 PRJNA1166865 63539 277 6.098039 16.89156803 Phaeodactylum tricornutum 2850 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.52e-4   NTclustered gi|219125369|ref|XM_002182920.1| 556484 g63298 i0 92.857 0.299638989169675 42 2 15 1 216 257 182 222 Phaeodactylum tricornutum CCAP 1055/1 predicted protein mRNA blastn 83 60.2 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
24538562 24538562 PRJNA1166865_P_NODE_3340_length_1068_cov_3.053266_g3205_i0 PRJNA1166865 3340 1068 3.053266 32.60888088 Thalassiosira pseudonana 35128 SAR_Eukaryotes SAR_Eukaryotes 651 0   NTclustered gi|223997787|ref|XM_002288531.1| 296543 g3205 i0 79.427 71.4728464419476 943 176 87 18 17 950 997 64 Thalassiosira pseudonana CCMP1335 heat shock protein/chaperone (hsp70_4), mRNA blastn 76333 651 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira pseudonana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;