RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1166865" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1166865 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1588741 1588741 PRJNA1166865_P_NODE_91802_length_242_cov_1.822485_g91561_i0 PRJNA1166865 91802 242 1.822485 4.4104137 Granulicella sp. 5B5 1617967 Bacteria Bacteria 63.9 1.01e-5   NTclustered gi|1886125103|gb|CP046444.1| 1617967 g91561 i0 97.297 0.152892561983471 37 1 15 0 19 55 2768890 2768854 Granulicella sp. 5B5 chromosome, complete genome blastn 37 63.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Granulicella Granulicella sp. 5B5
7967004 7967004 PRJNA1166865_P_NODE_76587_length_250_cov_2.564972_g76346_i0 PRJNA1166865 76587 250 2.564972 6.41243 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 403 5.43e-108   NTclustered gi|694178820|gb|KM200413.1| 171953 g76346 i0 96.327 96.892 245 9 98 0 1 245 2 246 Uncultured Acidobacteria bacterium clone T2-146 16S ribosomal RNA gene, partial sequence blastn 24223 403 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
7967242 7967242 PRJNA1166865_P_NODE_86667_length_245_cov_0.895349_g86426_i0 PRJNA1166865 86667 245 0.895349 2.19360505 Bryobacterales bacterium F-183 2802972 Bacteria Bacteria 217 7.41e-52   NTclustered gi|2131941663|dbj|AP025252.1| 2802972 g86426 i0 84.305 0.910204081632653 223 33 91 2 16 237 349395 349174 Bryobacterales bacterium F-183 DNA, nearly complete genome blastn 223 217 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium F-183
15615199 15615199 PRJNA1166865_P_NODE_24153_length_438_cov_0.873973_g23912_i0 PRJNA1166865 24153 438 0.873973 3.82800174 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 632 1.1899999999999998e-176   NTclustered gi|2621707050|emb|OY764903.1| 2212468 g23912 i0 92.727 101.885844748858 440 29 100 3 1 438 3558623 3558185 MAG: Bryobacteraceae bacterium isolate d7944118-f527-4ba8-a886-cdd3ae4bc3f8 genome assembly, chromosome: 1 blastn 44626 632 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
19439632 19439632 PRJNA1166865_P_NODE_74796_length_251_cov_1.674157_g74555_i0 PRJNA1166865 74796 251 1.674157 4.20213407 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 399 7.049999999999999e-107   NTclustered gi|76574295|gb|DQ139443.1| 171953 g74555 i0 95.276 99.5139442231076 254 8 100 4 1 251 888 636 Uncultured Acidobacteria bacterium clone CAL2 23S ribosomal RNA gene, partial sequence blastn 24978 399 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
20715113 20715113 PRJNA1166865_P_NODE_78857_length_249_cov_1.312500_g78616_i0 PRJNA1166865 78857 249 1.3125 3.268125 Terriglobus roseus 392734 Bacteria Bacteria 67.6 8.05e-7   NTclustered gi|390410848|gb|CP003379.1| 926566 g78616 i0 91.667 0.192771084337349 48 4 19 0 5 52 1658285 1658332 Terriglobus roseus DSM 18391, complete genome blastn 48 67.6 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus roseus
24539551 24539551 PRJNA1166865_P_NODE_71840_length_258_cov_1.637838_g71599_i0 PRJNA1166865 71840 258 1.637838 4.22562204 Paludibaculum fermentans 1473598 Bacteria Bacteria 281 2.75e-71   NTclustered gi|1929489624|gb|CP063849.1| 1473598 g71599 i0 87.109 189.895348837209 256 24 98 6 3 254 4785931 4786181 Paludibaculum fermentans strain P105 chromosome, complete genome blastn 48993 281 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae Paludibaculum Paludibaculum fermentans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;