RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1166865" and tax_kingdom = "Bamfordvirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bamfordvirae · 3 ✖

bioproject 1

  • PRJNA1166865 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3590023 3590023 PRJNA1166865_P_NODE_12643_length_600_cov_37.620493_g12409_i0 PRJNA1166865 12643 600 37.620493 225.722958 root 1 Root_unresolved Root_unresolved 1090 0   NTclustered gi|2288721861|gb|OP218818.1| 10535 g12409 i0 100 98.8483333333333 590 0 98 0 1 590 2311 1722 Unidentified adenovirus strain CHOP Ad5 blastn 59309 1090 1 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus unidentified adenovirus
3590109 3590109 PRJNA1166865_P_NODE_663_length_1761_cov_47.666469_g622_i0 PRJNA1166865 663 1761 47.666469 839.40651909 root 1 Root_unresolved Root_unresolved 3234 0   NTclustered gi|2616465679|gb|OR735196.1| 10515 g622 i0 99.83 99.9789892106757 1761 2 100 1 1 1761 4065 2306 Human adenovirus 2 isolate HAdV-C2/USA/11A6/2013, complete genome blastn 176063 3253 0.994159237626806 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari
6142515 6142515 PRJNA1166865_P_NODE_805_length_1677_cov_51.791147_g622_i1 PRJNA1166865 805 1677 51.791147 868.53753519 root 1 Root_unresolved Root_unresolved 2217 0   NTclustered gi|2616465679|gb|OR735196.1| 10515 g622 i1 99.917 99.933214072749 1203 1 100 0 475 1677 3508 2306 Human adenovirus 2 isolate HAdV-C2/USA/11A6/2013, complete genome blastn 167588 2222 0.997749774977498 Viruses   Bamfordvirae Preplasmiviricota Pharingeaviricetes Rowavirales Adenoviridae Mastadenovirus Mastadenovirus caesari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;