RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1166865" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1166865 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
312096 312096 PRJNA1166865_P_NODE_11121_length_639_cov_2.136042_g10889_i0 PRJNA1166865 11121 639 2.136042 13.64930838 Vermiphilus pyriformis 1763547 Bacteria Bacteria 1181 0   NTclustered gi|2207817285|gb|CP074345.1| 1763547 g10889 i0 100 559.990610328638 639 0 100 0 1 639 974260 973622 MAG: Vermiphilus pyriformis isolate TW-EDP1-1 chromosome, complete genome blastn 357834 1181 1 Bacteria Bacteria candidate phyla           Vermiphilus Vermiphilus pyriformis
1588641 1588641 PRJNA1166865_P_NODE_86782_length_245_cov_0.895349_g86541_i0 PRJNA1166865 86782 245 0.895349 2.19360505 Candidatus Babeliales bacterium 2803731 Bacteria Bacteria 344 3.26e-90   NTclustered gi|2874253748|emb|OY969622.1| 2803731 g86541 i0 92.181 135.90612244898 243 19 99 0 3 245 372038 371796 MAG: Candidatus Babeliales bacterium isolate MFD04434.bin.c.2 genome assembly, chromosome: 1 blastn 33297 344 1 Bacteria Bacteria candidate phyla     Candidatus Babeliae Candidatus Babeliales     Candidatus Babeliales bacterium
11791715 11791715 PRJNA1166865_P_NODE_50990_length_309_cov_1.305085_g50749_i0 PRJNA1166865 50990 309 1.305085 4.03271265 Vermiphilus pyriformis 1763547 Bacteria Bacteria 571 1.7899999999999995e-158   NTclustered gi|2207817285|gb|CP074345.1| 1763547 g50749 i0 100 62.7313915857605 309 0 100 0 1 309 974265 974573 MAG: Vermiphilus pyriformis isolate TW-EDP1-1 chromosome, complete genome blastn 19384 571 1 Bacteria Bacteria candidate phyla           Vermiphilus Vermiphilus pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;