RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1164198" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1164198 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2862779 2862779 PRJNA1164198_P_NODE_16203_length_307_cov_2.632479_g15934_i0 PRJNA1164198 16203 307 2.632479 8.08171053 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 239 2.05e-58   NTclustered gi|2813917447|gb|CP170506.1| 2811408 g15934 i0 82.394 189.296416938111 284 40 91 10 1 279 3047224 3047502 MAG: Chthoniobacteraceae bacterium isolate SH-KS-3 chromosome, complete genome blastn 58114 239 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
6689890 6689890 PRJNA1164198_P_NODE_21146_length_270_cov_1.517766_g20877_i0 PRJNA1164198 21146 270 1.517766 4.0979682 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 342 1.31e-89   NTclustered gi|2621704341|emb|OY760937.1| 2499141 g20877 i0 89.63 133.048148148148 270 27 100 1 1 270 3992068 3991800 MAG: Verrucomicrobiae bacterium isolate 066a7682-a1ac-48de-8761-1470dc9e5c3e genome assembly, chromosome: 1 blastn 35923 342 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
7965180 7965180 PRJNA1164198_P_NODE_16167_length_308_cov_1.174468_g15898_i0 PRJNA1164198 16167 308 1.174468 3.61736144 Prosthecobacter fusiformis 48464 Bacteria Bacteria 525 1.4099999999999995e-144   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g15898 i0 97.403 244.857142857143 308 8 100 0 1 308 2488 2795 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 75416 525 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis
13065601 13065601 PRJNA1164198_P_NODE_2991_length_725_cov_3.254601_g2770_i0 PRJNA1164198 2991 725 3.254601 23.59585725 Prosthecobacter dejongeii 48465 Bacteria Bacteria 1201 0   NTclustered gi|183579826|emb|AM905423.1| 48465 g2770 i0 96.556 128.51724137931 726 24 100 1 1 725 1070 1795 Prosthecobacter dejongeii partial 23S rRNA gene, strain DSM12251 blastn 93175 1201 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter dejongeii
16889127 16889127 PRJNA1164198_P_NODE_5994_length_513_cov_3.020455_g5739_i0 PRJNA1164198 5994 513 3.020455 15.49493415 Prosthecobacter debontii 48467 Bacteria Bacteria 898 0   NTclustered gi|164510703|emb|AJ966882.1| 48467 g5739 i0 98.252 274.009746588694 515 5 100 3 1 513 4544 4032 Prosthecobacter debontii 16S rRNA gene (partial), 23S rRNA gene (partial), tRNA-Ala gene, tRNA-Ile gene and ITS1, strain DSM 14044 blastn 140567 898 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter debontii
23264192 23264192 PRJNA1164198_P_NODE_2079_length_859_cov_2.913486_g1894_i0 PRJNA1164198 2079 859 2.913486 25.02684474 Prosthecobacter fusiformis 48464 Bacteria Bacteria 1459 0   NTclustered gi|12583974|gb|AF245378.1|AF245378 48464 g1894 i0 97.322 272.527357392317 859 23 100 0 1 859 1052 194 Prosthecobacter fusiformis 23S ribosomal RNA gene, partial sequence blastn 234101 1459 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter fusiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;