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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1164198" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1164198 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
311969 311969 PRJNA1164198_P_NODE_19281_length_282_cov_1.550239_g19012_i0 PRJNA1164198 19281 282 1.550239 4.37167398 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 291 5.06e-74   NTclustered gi|698815387|ref|XM_009842421.1| 112090 g19012 i0 88.382 81.2943262411348 241 28 85 0 2 242 304 64 Aphanomyces astaci actin mRNA blastn 22925 291 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
3589978 3589978 PRJNA1164198_P_NODE_23523_length_256_cov_1.278689_g23254_i0 PRJNA1164198 23523 256 1.278689 3.27344384 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 195 3.65e-45   NTclustered gi|166040017|emb|CU350235.1| 100861 g23254 i0 82.379 82.76171875 227 36 88 4 32 256 395 171 Aphanomyces euteiches cDNA blastn 21187 196 0.994897959183674 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
6689898 6689898 PRJNA1164198_P_NODE_23146_length_258_cov_1.486486_g22877_i0 PRJNA1164198 23146 258 1.486486 3.83513388 Plasmopara halstedii 4781 SAR_Eukaryotes SAR_Eukaryotes 171 6.21e-38   NTclustered gi|1378148413|ref|XM_024722856.1| 4781 g22877 i0 82.979 43.4883720930233 188 32 73 0 60 247 188 1 Plasmopara halstedii 60s ribosomal protein l27a (PHALS_05303), partial mRNA blastn 11220 171 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
7965197 7965197 PRJNA1164198_P_NODE_19927_length_278_cov_0.926829_g19658_i0 PRJNA1164198 19927 278 0.926829 2.57658462 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 209 1.43e-49   NTclustered gi|813114452|ref|XM_012339991.1| 695850 g19658 i0 81.061 15.9388489208633 264 48 95 2 14 276 484 222 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 4431 209 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
10515562 10515562 PRJNA1164198_P_NODE_10269_length_388_cov_1.438095_g10002_i0 PRJNA1164198 10269 388 1.438095 5.5798086 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 204 9.67e-48   NTclustered gi|813111021|ref|XM_012339685.1| 695850 g10002 i0 76.425 32.8350515463918 386 86 99 5 3 386 514 132 Saprolegnia parasitica CBS 223.65 hypothetical protein mRNA blastn 12740 204 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
16342017 16342017 PRJNA1164198_P_NODE_28013_length_246_cov_3.797688_g27744_i0 PRJNA1164198 28013 246 3.797688 9.34231248 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 235 2.06e-57   NTclustered gi|1103652769|gb|AF085345.2| 82926 g27744 i0 84.914 91.630081300813 232 35 94 0 1 232 270 39 Pythium splendens actin mRNA, complete cds blastn 22541 237 0.991561181434599 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;