RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1164198" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1164198 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15614739 15614739 PRJNA1164198_P_NODE_12993_length_344_cov_1.011070_g12724_i0 PRJNA1164198 12993 344 1.01107 3.4780808 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.033   NTclustered gi|2912999222|dbj|AP039605.1| 145626 g12724 i0 100 0.162790697674419 28 0 8 0 273 300 55977414 55977387 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 24, sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
21988691 21988691 PRJNA1164198_P_NODE_19638_length_279_cov_3.432039_g19369_i0 PRJNA1164198 19638 279 3.432039 9.57538881 Mya arenaria 6604 Mollusca Mollusca 255 1.82e-63   NTclustered gi|2427418402|ref|XM_052927352.1| 6604 g19369 i0 86.076 79.7813620071685 237 33 85 0 1 237 339 103 PREDICTED: Mya arenaria tubulin beta chain-like (LOC128219534), mRNA blastn 22259 255 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
23264178 23264178 PRJNA1164198_P_NODE_17059_length_299_cov_1.380531_g16790_i0 PRJNA1164198 17059 299 1.380531 4.12778769 Mizuhopecten yessoensis 6573 Mollusca Mollusca 54.7 0.008   NTclustered gi|1207924050|ref|XM_021495386.1| 6573 g16790 i0 94.286 0.234113712374582 35 2 12 0 83 117 916 950 PREDICTED: Mizuhopecten yessoensis WW domain-binding protein 11-like (LOC110448897), transcript variant X2, mRNA blastn 70 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
23264202 23264202 PRJNA1164198_P_NODE_22619_length_261_cov_1.563830_g22350_i0 PRJNA1164198 22619 261 1.56383 4.0815963 Mizuhopecten yessoensis 6573 Mollusca Mollusca 165 2.93e-36   NTclustered gi|1207979966|ref|XM_021483825.1| 6573 g22350 i0 84.302 44.3793103448276 172 23 65 4 64 233 76 245 PREDICTED: Mizuhopecten yessoensis 40S ribosomal protein S14-A-like (LOC110440664), partial mRNA blastn 11583 165 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;