RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1164198" and tax_phylum = "Cyanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1164198 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4867539 4867539 PRJNA1164198_P_NODE_13364_length_339_cov_1.172932_g13095_i0 PRJNA1164198 13364 339 1.172932 3.97623948 Cyanophyceae 3028117 Bacteria Bacteria 534 2.61e-147   NTclustered gi|225696219|gb|FJ805886.1| 259957 g13095 i0 95.266 161.312684365782 338 15 99 1 3 339 2608 2271 Uncultured Chroococcidiopsis sp. clone NA4_4 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 54685 538 0.992565055762082 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.
23264217 23264217 PRJNA1164198_P_NODE_25759_length_250_cov_1.322034_g25490_i0 PRJNA1164198 25759 250 1.322034 3.305085 Oscillatoria lutea 212356 Bacteria Bacteria 435 1.92e-117   NTclustered gi|1345606792|gb|MG968526.1| 2081949 g25490 i0 98 143.04 250 5 100 0 1 250 710 461 Oscillatoria lutea UTEX B 1814 23S ribosomal RNA gene, partial sequence blastn 35760 435 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Oscillatoriales Oscillatoriaceae Oscillatoria Oscillatoria lutea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;