RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1164198" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1164198 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
311963 311963 PRJNA1164198_P_NODE_17781_length_293_cov_1.545455_g17512_i0 PRJNA1164198 17781 293 1.545455 4.52818315 Plasmodium malariae 5858 SAR_Eukaryotes SAR_Eukaryotes 80.5 1.25e-10   NTclustered gi|379988059|dbj|AB649418.1| 5858 g17512 i0 78 27.8430034129693 150 17 51 12 126 273 26427 26562 Plasmodium malariae apicoplast DNA, partial sequence, strain: Kisii67 blastn 8158 80.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium malariae
16889133 16889133 PRJNA1164198_P_NODE_8454_length_429_cov_2.292135_g8192_i0 PRJNA1164198 8454 429 2.292135 9.83325915 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 244 6.36e-60   NTclustered gi|401402052|ref|XM_003881109.1| 572307 g8192 i0 78.421 64.5198135198135 380 78 88 4 4 381 1 378 Neospora caninum Liverpool putative ubiquitin / ribosomal protein CEP52 fusion protein (NCLIV_042000), partial mRNA blastn 27679 244 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;