RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1164198" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1164198 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12518184 12518184 PRJNA1164198_P_NODE_19590_length_280_cov_1.227053_g19321_i0 PRJNA1164198 19590 280 1.227053 3.4357484 Bacteria 2 Bacteria Bacteria 73.1 1.98e-8   NTclustered gi|379998737|gb|CP002191.1| 745776 g19321 i0 84.932 1.29285714285714 73 9 26 2 2 73 2316209 2316280 Deinococcus gobiensis I-0, complete genome blastn 362 73.1 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus gobiensis
16889044 16889044 PRJNA1164198_P_NODE_1254_length_1065_cov_2.621976_g1108_i0 PRJNA1164198 1254 1065 2.621976 27.9240444 Deinococcus maricopensis 309887 Bacteria Bacteria 1035 0   NTclustered gi|319753907|gb|CP002454.1| 709986 g1108 i0 84.516 623.544600938967 1085 126 99 36 4 1063 640717 639650 Deinococcus maricopensis DSM 21211, complete genome blastn 664075 1035 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus maricopensis
18891077 18891077 PRJNA1164198_P_NODE_25655_length_250_cov_2.378531_g25386_i0 PRJNA1164198 25655 250 2.378531 5.9463275 Deinococcus 1298 Bacteria Bacteria 460 3.17e-125   NTclustered gi|2890653062|gb|CP177252.1| 367282 g25386 i0 100 171.88 249 0 99 0 2 250 2671785 2672033 Deinococcus yunweiensis strain KCTC 3955 chromosome, complete genome blastn 42970 462 0.995670995670996 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus yunweiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;