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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1164198" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1164198 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9239911 9239911 PRJNA1164198_P_NODE_28688_length_245_cov_1.686047_g28419_i0 PRJNA1164198 28688 245 1.686047 4.13081515 Candidatus Saccharibacteria genomosp. TM7-H1 2080739 Bacteria Bacteria 346 9.059999999999999e-91   NTclustered gi|1566427536|gb|CP026537.1| 2080739 g28419 i0 92.917 75.1183673469388 240 14 98 3 7 245 543415 543652 Candidatus Saccharibacteria genomosp. TM7-H1 isolate E1 chromosome blastn 18404 346 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria genomosp. TM7-H1
17617249 17617249 PRJNA1164198_P_NODE_31014_length_242_cov_0.923077_g30745_i0 PRJNA1164198 31014 242 0.923077 2.23384634 Bacillati 1783272 Bacteria Bacteria 339 1.49e-88   NTclustered gi|1899225384|gb|MT967848.1| 1983405 g30745 i0 91.837 950.165289256198 245 16 100 3 1 242 2036 1793 Uncultured Candidatus Saccharimonas sp. clone asv_347_2260 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 229940 339 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas uncultured Candidatus Saccharimonas sp.
24537862 24537862 PRJNA1164198_P_NODE_14180_length_329_cov_0.878906_g13911_i0 PRJNA1164198 14180 329 0.878906 2.89160074 Vermiphilus pyriformis 1763547 Bacteria Bacteria 608 1.4599999999999995e-169   NTclustered gi|2207817285|gb|CP074345.1| 1763547 g13911 i0 100 173.586626139818 329 0 100 0 1 329 973703 973375 MAG: Vermiphilus pyriformis isolate TW-EDP1-1 chromosome, complete genome blastn 57110 608 1 Bacteria Bacteria candidate phyla           Vermiphilus Vermiphilus pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;