RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1160211" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1160211 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2313367 2313367 PRJNA1160211_S_NODE_106122_length_445_cov_29.510753_g104894_i0 PRJNA1160211 106122 445 29.510753 131.32285085 root 1 Root_unresolved Root_unresolved 56.5 0.003   NTclustered gi|969874815|gb|CP013695.1| 2285 g104894 i0 100 0.528089887640449 30 0 7 0 416 445 41 12 Sulfolobus acidocaldarius strain NG05B_CO5_07 chromosome blastn 235 56.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius
11241598 11241598 PRJNA1160211_S_NODE_17409_length_729_cov_10.028963_g16463_i0 PRJNA1160211 17409 729 10.028963 73.11114027 root 1 Root_unresolved Root_unresolved 56.5 0.006   NTclustered gi|969874815|gb|CP013695.1| 2285 g16463 i0 100 0.130315500685871 30 0 4 0 700 729 41 12 Sulfolobus acidocaldarius strain NG05B_CO5_07 chromosome blastn 95 56.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius
11241932 11241932 PRJNA1160211_S_NODE_266469_length_249_cov_7.278409_g265236_i0 PRJNA1160211 266469 249 7.278409 18.12323841 root 1 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|969874815|gb|CP013695.1| 2285 g265236 i0 100 0.943775100401606 30 0 12 0 220 249 41 12 Sulfolobus acidocaldarius strain NG05B_CO5_07 chromosome blastn 235 56.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;