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contig_metadata

21 rows where analysis = "blastn", bioproject = "PRJNA1160211" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 21 ✖

tax_clade 1

bioproject 1

  • PRJNA1160211 · 21 ✖

analysis 1

  • blastn · 21 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1038642 1038642 PRJNA1160211_S_NODE_254541_length_258_cov_1.875676_g253308_i0 PRJNA1160211 254541 258 1.875676 4.83924408 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 248 2.79e-61   NTclustered gi|2795037549|ref|XM_067927198.1| 4785 g253308 i0 93.902 4.92248062015504 164 10 64 0 23 186 233 396 Phytophthora cinnamomi 40S ribosomal protein S20 (IUM83_03212), partial mRNA blastn 1270 250 0.992 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
1038759 1038759 PRJNA1160211_S_NODE_28861_length_657_cov_163.839041_g27770_i0 PRJNA1160211 28861 657 163.839041 1076.42249937 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 427 9.3e-115   NTclustered gi|9858457|gb|AF085344.1|AF085344 82926 g27770 i0 86.216 59.0076103500761 399 50 60 4 164 560 483 88 Pythium splendens calmodulin mRNA, complete cds blastn 38768 431 0.990719257540603 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
3588853 3588853 PRJNA1160211_S_NODE_175203_length_340_cov_10.546816_g173970_i0 PRJNA1160211 175203 340 10.546816 35.8591744 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 527 4.3799999999999985e-145   NTclustered gi|50261276|ref|NC_005984.1| 4770 g173970 i0 96.552 99.2 319 9 93 2 1 317 9947 9629 Saprolegnia ferax mitochondrion, complete genome blastn 33728 527 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
7963519 7963519 PRJNA1160211_S_NODE_285167_length_238_cov_6.503030_g283934_i0 PRJNA1160211 285167 238 6.50303 15.4772114 Peronospora aparines 162109 SAR_Eukaryotes SAR_Eukaryotes 392 1.11e-104   NTclustered gi|23306501|gb|AY035484.1| 162109 g283934 i0 99.535 90.8865546218487 215 1 90 0 1 215 473 259 Peronospora aparines isolate MG 4-5 large subunit ribosomal RNA gene, partial sequence blastn 21631 392 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora aparines
8692035 8692035 PRJNA1160211_S_NODE_91087_length_475_cov_3.318408_g89864_i0 PRJNA1160211 91087 475 3.318408 15.762438 root 1 Root_unresolved Root_unresolved 710 0   NTclustered gi|166046695|emb|CU367805.1| 100861 g89864 i0 100 46.1936842105263 384 0 81 0 27 410 1 384 Aphanomyces euteiches cDNA blastn 21942 717 0.99023709902371 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
9238447 9238447 PRJNA1160211_S_NODE_45008_length_592_cov_5.978805_g43853_i0 PRJNA1160211 45008 592 5.978805 35.3945256 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 6.86e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g43853 i0 80.533 57.1418918918919 375 65 62 4 32 399 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
10514056 10514056 PRJNA1160211_S_NODE_299089_length_206_cov_7.977444_g297856_i0 PRJNA1160211 299089 206 7.977444 16.43353464 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 298 2.09e-76   NTclustered gi|256009645|gb|GQ374534.1| 112090 g297856 i0 96.154 25.0728155339806 182 7 88 0 5 186 384 203 Aphanomyces astaci strain Gb04 28S ribosomal RNA gene, partial sequence blastn 5165 298 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
11241626 11241626 PRJNA1160211_S_NODE_182169_length_331_cov_22.624031_g180936_i0 PRJNA1160211 182169 331 22.624031 74.88554261 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 544 4.22e-150   NTclustered gi|827085599|gb|KM058092.1| 120572 g180936 i0 98.693 92.3987915407855 306 4 92 0 26 331 1 306 Peronospora bulbocapni isolate HV7 28S ribosomal RNA gene, partial sequence blastn 30584 544 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora bulbocapni
11242069 11242069 PRJNA1160211_S_NODE_300889_length_199_cov_4.007937_g299656_i0 PRJNA1160211 300889 199 4.007937 7.97579463 Aquastella 1495611 SAR_Eukaryotes SAR_Eukaryotes 357 3.2699999999999996e-94   NTclustered gi|629632980|gb|KF294792.1| 1495612 g299656 i0 100 96.9095477386935 193 0 97 0 7 199 1568 1376 Aquastella attenuata isolate SL45 18S ribosomal RNA gene, partial sequence blastn 19285 357 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aquastella Aquastella attenuata
11788224 11788224 PRJNA1160211_S_NODE_183370_length_330_cov_4.097276_g182137_i0 PRJNA1160211 183370 330 4.097276 13.521010800000001 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 97.1 1.41e-15   NTclustered gi|698793878|ref|XR_717100.1| 112090 g182137 i0 80.153 42.3333333333333 131 25 48 1 130 259 3791 3661 Aphanomyces astaci 28S ribosomal RNA rRNA blastn 13970 97.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
13791967 13791967 PRJNA1160211_S_NODE_253691_length_259_cov_1.161290_g252458_i0 PRJNA1160211 253691 259 1.16129 3.0077411 root 1 Root_unresolved Root_unresolved 468 1.98e-127   NTclustered gi|166044613|emb|CU367522.1| 100861 g252458 i0 99.609 248.320463320463 256 1 99 0 4 259 478 223 Aphanomyces euteiches cDNA blastn 64315 468 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
17616720 17616720 PRJNA1160211_S_NODE_63234_length_539_cov_3.236052_g62042_i0 PRJNA1160211 63234 539 3.236052 17.44232028 Achlyaceae 3456998 SAR_Eukaryotes SAR_Eukaryotes 350 1.6800000000000002e-91   NTclustered gi|22086549|gb|AF402100.1| 4768 g62042 i0 78.558 93.9165120593692 541 108 99 7 3 539 942 1478 Achlya ambisexualis isolate JS854 heat shock protein Hsp90 mRNA, complete cds blastn 50621 350 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya ambisexualis
18889640 18889640 PRJNA1160211_S_NODE_108995_length_440_cov_6.792916_g107767_i0 PRJNA1160211 108995 440 6.792916 29.8888304 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 706 0   NTclustered gi|50261276|ref|NC_005984.1| 4770 g107767 i0 95.682 106.897727272727 440 17 100 2 1 440 11082 10645 Saprolegnia ferax mitochondrion, complete genome blastn 47035 706 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia ferax
20164548 20164548 PRJNA1160211_S_NODE_129216_length_406_cov_4.138138_g127984_i0 PRJNA1160211 129216 406 4.138138 16.80084028 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 154 1.04e-32   NTclustered gi|328802538|emb|FR832890.1| 890382 g127984 i0 76.038 58.9581280788177 313 66 76 8 93 402 1392 1086 Albugo laibachii Nc14, mitochondrial genomic contig NODE_36_length_2553_cov_1396.121460 blastn 23937 154 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
20710505 20710505 PRJNA1160211_S_NODE_126117_length_411_cov_4.337278_g124886_i0 PRJNA1160211 126117 411 4.337278 17.82621258 Aphanomyces sp. 1982524 SAR_Eukaryotes SAR_Eukaryotes 760 0   NTclustered gi|1578815424|gb|MK546601.1| 1982524 g124886 i0 100 99.9318734793187 411 0 100 0 1 411 590 180 Aphanomyces sp. voucher CCIBt4545 large subunit ribosomal RNA gene, partial sequence blastn 41072 760 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces sp.
21440674 21440674 PRJNA1160211_S_NODE_289677_length_232_cov_2.905660_g288444_i0 PRJNA1160211 289677 232 2.90566 6.7411312 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 379 8.379999999999998e-101   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g288444 i0 97.309 100.827586206897 223 6 96 0 10 232 4088 4310 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 23392 379 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
23261942 23261942 PRJNA1160211_S_NODE_205459_length_304_cov_13.753247_g204226_i0 PRJNA1160211 205459 304 13.753247 41.80987088 Phytophthora ilicis 89335 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|2314988899|ref|NC_067072.1| 89335 g204226 i0 94.444 0.118421052631579 36 2 12 0 257 292 24827 24792 Phytophthora ilicis voucher P3939 mitochondrion, complete genome blastn 36 56.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ilicis
23262055 23262055 PRJNA1160211_S_NODE_221779_length_287_cov_20.990654_g220546_i0 PRJNA1160211 221779 287 20.990654 60.24317698 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 490 4.749999999999998e-134   NTclustered gi|363498776|gb|JN662487.1| 120398 g220546 i0 100 92.1742160278746 265 0 92 0 23 287 50 314 Aphanomyces stellatus strain GF 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 26454 490 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
23262486 23262486 PRJNA1160211_S_NODE_286159_length_237_cov_3.158537_g284926_i0 PRJNA1160211 286159 237 3.158537 7.48573269 Myzocytiopsis humana 135482 SAR_Eukaryotes SAR_Eukaryotes 438 1.4e-118   NTclustered gi|918464080|gb|KT257319.1| 135482 g284926 i0 100 98.7805907172996 237 0 100 0 1 237 2624 2860 Lagenidium humanum 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23411 438 1 Eukaryota Sar   Oomycota   Myzocytiopsidales Myzocytiopsidaceae Myzocytiopsis Myzocytiopsis humana
25264451 25264451 PRJNA1160211_S_NODE_129580_length_405_cov_13.831325_g128348_i0 PRJNA1160211 129580 405 13.831325 56.01686625 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 664 0   NTclustered gi|1111669722|ref|NC_032051.1| 112090 g128348 i0 98.158 102.82962962963 380 7 94 0 26 405 3572 3951 Aphanomyces astaci isolate AP03 mitochondrion, complete genome blastn 41646 667 0.995502248875562 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
25264734 25264734 PRJNA1160211_S_NODE_198620_length_312_cov_4.271967_g197387_i0 PRJNA1160211 198620 312 4.271967 13.32853704 Peronosporales 4776 SAR_Eukaryotes SAR_Eukaryotes 551 2.359999999999999e-152   NTclustered gi|1238675774|gb|MF783088.1| 4784 g197387 i0 99.668 96.474358974359 301 1 96 0 1 301 981 681 Phytophthora capsici isolate CACAO small subunit ribosomal RNA gene, partial sequence blastn 30100 551 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;