RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1160211" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1160211 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14338249 14338249 PRJNA1160211_S_NODE_147192_length_378_cov_1997.724590_g145959_i0 PRJNA1160211 147192 378 1997.72459 7551.3989502 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 167 1.23e-36   NTclustered gi|23268559|gb|AF537103.1| 37360 g145959 i0 98.925 135.330687830688 93 1 25 0 286 378 484 392 Plasmodiophora brassicae 23S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 51155 167 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
15613145 15613145 PRJNA1160211_S_NODE_299273_length_205_cov_3210.590909_g298040_i0 PRJNA1160211 299273 205 3210.590909 6581.71136345 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 191 3.64e-44   NTclustered gi|23268559|gb|AF537103.1| 37360 g298040 i0 95.041 374.990243902439 121 6 98 0 85 205 5 125 Plasmodiophora brassicae 23S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 76873 191 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
23261150 23261150 PRJNA1160211_S_NODE_107119_length_443_cov_1897.378378_g105891_i0 PRJNA1160211 107119 443 1897.378378 8405.38621454 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 171 1.13e-37   NTclustered gi|23268559|gb|AF537103.1| 37360 g105891 i0 98.947 112.972911963883 95 1 21 0 349 443 486 392 Plasmodiophora brassicae 23S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 50047 171 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;