RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1160211" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1160211 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4866389 4866389 PRJNA1160211_S_NODE_173764_length_342_cov_6.152416_g172531_i0 PRJNA1160211 173764 342 6.152416 21.04126272 Fimbriimonas 1005038 Bacteria Bacteria 278 4.9e-70   NTclustered gi|663071213|gb|CP007139.1| 661478 g172531 i0 83.784 178.824561403509 296 45 86 3 36 329 29785 29491 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 61158 278 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
6688241 6688241 PRJNA1160211_S_NODE_289986_length_231_cov_14.544304_g288753_i0 PRJNA1160211 289986 231 14.544304 33.59734224 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 206 1.5e-48   NTclustered gi|2076447151|gb|CP075366.1| 2682144 g288753 i0 85.149 24.4978354978355 202 28 87 2 2 202 895838 896038 MAG: Fimbriimonadaceae bacterium isolate ACE_ARM8 chromosome blastn 5659 206 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
12516938 12516938 PRJNA1160211_S_NODE_143410_length_384_cov_4.292605_g142177_i0 PRJNA1160211 143410 384 4.292605 16.4836032 Fimbriimonas 1005038 Bacteria Bacteria 470 8.54e-128   NTclustered gi|663071213|gb|CP007139.1| 661478 g142177 i0 88.889 22.4947916666667 387 35 100 6 1 384 27960 28341 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 8638 470 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;