RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1160211" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA1160211 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11242072 11242072 PRJNA1160211_S_NODE_301009_length_198_cov_5.936000_g299776_i0 PRJNA1160211 301009 198 5.936 11.75328 Apusomonadidae 172820 Root_unresolved Root_unresolved 124 3.59e-24   NTclustered gi|2206682162|gb|OM966635.1| 1314681 g299776 i0 80 21.6919191919192 180 26 87 9 26 198 5712 5536 Mylnikovia oxoniensis strain CCAP19012 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 4295 124 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Mylnikovia Mylnikovia oxoniensis
15612815 15612815 PRJNA1160211_S_NODE_245713_length_265_cov_4.098958_g244480_i0 PRJNA1160211 245713 265 4.098958 10.8622387 Thecamonas trahens 529818 Root_unresolved Root_unresolved 93.5 1.43e-14   NTclustered gi|923122628|ref|XM_013899330.1| 461836 g244480 i0 92.308 0.422641509433962 65 5 25 0 164 228 2585 2521 Thecamonas trahens ATCC 50062 major vault protein (AMSG_09422), mRNA blastn 112 93.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;