RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1159911" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1159911 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13791292 13791292 PRJNA1159911_P_NODE_69231_length_285_cov_2.349057_g68689_i0 PRJNA1159911 69231 285 2.349057 6.69481245 Desulfarculus 453229 Bacteria Bacteria 141 5.46e-29   NTclustered gi|301638057|gb|CP002085.1| 644282 g68689 i0 83.125 44.821052631579 160 21 54 4 113 266 830874 831033 Desulfarculus baarsii DSM 2075, complete genome blastn 12774 141 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae Desulfarculus Desulfarculus baarsii
16884704 16884704 PRJNA1159911_P_NODE_354_length_8846_cov_4.847373_g350_i0 PRJNA1159911 354 8846 4.847373 428.79861558 Geopsychrobacteraceae bacterium 3065857 Bacteria Bacteria 1661 0   NTclustered gi|2621701823|emb|OY759353.1| 3065857 g350 i0 82.595 3.73411711508026 1896 316 21 7 2934 4816 4680086 4681980 MAG: Geopsychrobacteraceae bacterium isolate b20cad9c-d1d2-40c5-8f7b-178437520c26 genome assembly, chromosome: 1 blastn 33032 1661 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae   Geopsychrobacteraceae bacterium
23260746 23260746 PRJNA1159911_P_NODE_81999_length_259_cov_1.451613_g81457_i0 PRJNA1159911 81999 259 1.451613 3.75967767 Desulfobacterales bacterium 2044940 Bacteria Bacteria 215 2.84e-51   NTclustered gi|2621717821|emb|OY776218.1| 2044940 g81457 i0 82.213 2.51351351351351 253 41 97 4 2 252 2792851 2793101 MAG: Desulfobacterales bacterium isolate b599e3c4-2ca3-45e6-bc7f-bb04c01707dc genome assembly, chromosome: 1 blastn 651 215 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;