RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1159911" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1159911 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4135122 4135122 PRJNA1159911_P_NODE_67844_length_289_cov_1.259259_g67302_i0 PRJNA1159911 67844 289 1.259259 3.63925851 Labilithrix luteola 1391654 Bacteria Bacteria 132 3.3400000000000003e-26   NTclustered gi|913610804|gb|CP012333.1| 1391654 g67302 i0 81.325 1.05190311418685 166 28 57 3 124 287 179010 178846 Labilithrix luteola strain DSM 27648, complete genome blastn 304 132 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
7962028 7962028 PRJNA1159911_P_NODE_93987_length_246_cov_0.890173_g93445_i0 PRJNA1159911 93987 246 0.890173 2.18982558 Minicystis rosea 888845 Bacteria Bacteria 128 3.59e-25   NTclustered gi|1127353251|gb|CP016211.1| 888845 g93445 i0 84.921 22.2682926829268 126 19 51 0 72 197 9904393 9904268 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 5478 128 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
13062036 13062036 PRJNA1159911_P_NODE_72551_length_278_cov_1.126829_g72009_i0 PRJNA1159911 72551 278 1.126829 3.13258462 Labilithrix luteola 1391654 Bacteria Bacteria 191 5.2e-44   NTclustered gi|913610804|gb|CP012333.1| 1391654 g72009 i0 80.992 33.1834532374101 242 44 87 2 10 250 6792415 6792175 Labilithrix luteola strain DSM 27648, complete genome blastn 9225 191 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
18160098 18160098 PRJNA1159911_P_NODE_74915_length_273_cov_1.140000_g74373_i0 PRJNA1159911 74915 273 1.14 3.1122 Myxococcus fulvus 33 Bacteria Bacteria 289 1.75e-73   NTclustered gi|817709775|gb|CP006003.1| 1334629 g74373 i0 85.714 2 273 39 100 0 1 273 6635802 6636074 Myxococcus fulvus 124B02, complete genome blastn 546 289 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Myxococcus Myxococcus fulvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;