RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1159911" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1159911 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1583089 1583089 PRJNA1159911_P_NODE_75802_length_271_cov_1.333333_g75260_i0 PRJNA1159911 75802 271 1.333333 3.61333243 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 182 3.04e-41   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g75260 i0 82.381 33.7675276752768 210 36 77 1 1 209 11221296 11221087 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 9151 182 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
6686777 6686777 PRJNA1159911_P_NODE_96406_length_244_cov_1.128655_g95864_i0 PRJNA1159911 96406 244 1.128655 2.7539182 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 52.8 0.022   NTclustered gi|2621706198|emb|OY764542.1| 2026734 g95864 i0 100 0.114754098360656 28 0 11 0 28 55 246743 246770 MAG: Dehalococcoidia bacterium isolate 6a5b5718-e0ca-4583-9154-875545b380e3 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;