RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1159911" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1159911 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5411210 5411210 PRJNA1159911_P_NODE_61145_length_307_cov_1.440171_g60603_i0 PRJNA1159911 61145 307 1.440171 4.42132497 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 315 3.31e-81   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g60603 i0 85.437 58.2768729641694 309 38 100 6 1 307 3980 3677 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 17891 315 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
19434524 19434524 PRJNA1159911_P_NODE_79036_length_264_cov_2.570681_g78494_i0 PRJNA1159911 79036 264 2.570681 6.78659784 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 488 1.5499999999999999e-133   NTclustered gi|238617602|gb|FJ973377.1| 188950 g78494 i0 100 99.7727272727273 264 0 100 0 1 264 314 51 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 26340 488 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
24533764 24533764 PRJNA1159911_P_NODE_41660_length_391_cov_1.823899_g41118_i0 PRJNA1159911 41660 391 1.823899 7.13144509 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 717 0   NTclustered gi|238617602|gb|FJ973377.1| 188950 g41118 i0 99.744 87.2404092071611 391 1 100 0 1 391 2149 1759 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 34111 717 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;