RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1159911" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 6 ✖

bioproject 1

  • PRJNA1159911 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10511540 10511540 PRJNA1159911_P_NODE_4509_length_1674_cov_7.773891_g4283_i0 PRJNA1159911 4509 1674 7.773891 130.13493534 Respirovirus muris 3052731 Viruses Viruses 2970 0   NTclustered gi|546225824|dbj|AB855655.1| 3052731 g4283 i0 98.865 49.8393070489845 1674 1 100 1 1 1674 69 1724 Respirovirus muris genomic RNA, complete genome, strain: Z blastn 83431 2970 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus muris
13061349 13061349 PRJNA1159911_P_NODE_3791_length_1830_cov_6.859419_g3598_i0 PRJNA1159911 3791 1830 6.859419 125.5273677 Respirovirus muris 3052731 Viruses Viruses 3336 0   NTclustered gi|546225824|dbj|AB855655.1| 3052731 g3598 i0 99.563 69.8874316939891 1830 8 100 0 1 1830 1757 3586 Respirovirus muris genomic RNA, complete genome, strain: Z blastn 127894 3336 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus muris
16340469 16340469 PRJNA1159911_P_NODE_6473_length_1361_cov_2.304348_g6158_i0 PRJNA1159911 6473 1361 2.304348 31.36217628 Respirovirus 186938 Viruses Viruses 2483 0   NTclustered gi|60898|emb|X03614.1| 12730 g6158 i0 99.56 48.0220426157237 1364 3 100 1 1 1361 7012 8375 Sendai virus (strain Z) genome RNA 5'end blastn 65358 2483 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
17615593 17615593 PRJNA1159911_P_NODE_102254_length_237_cov_2.658537_g101712_i0 PRJNA1159911 102254 237 2.658537 6.30073269 Respirovirus 186938 Viruses Viruses 438 1.4e-118   NTclustered gi|60898|emb|X03614.1| 12730 g101712 i0 100 38.4261603375527 237 0 100 0 1 237 5735 5971 Sendai virus (strain Z) genome RNA 5'end blastn 9107 438 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
18889430 18889430 PRJNA1159911_P_NODE_16695_length_740_cov_5.640180_g16199_i0 PRJNA1159911 16695 740 5.64018 41.737332 Respirovirus 186938 Viruses Viruses 1356 0   NTclustered gi|60928|emb|X00087.1| 12730 g16199 i0 99.73 52 740 2 100 0 1 740 4029 4768 Sendai virus genome RNA for proteins NP, P, C, M and part of F blastn 38480 1356 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis
23990158 23990158 PRJNA1159911_P_NODE_34039_length_450_cov_3.464191_g33498_i0 PRJNA1159911 34039 450 3.464191 15.5888595 Respirovirus 186938 Viruses Viruses 815 0   NTclustered gi|60928|emb|X00087.1| 12730 g33498 i0 99.333 50.7511111111111 450 3 100 0 1 450 3645 4094 Sendai virus genome RNA for proteins NP, P, C, M and part of F blastn 22838 815 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Respirovirus Respirovirus laryngotracheitidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;