contig_metadata
7 rows where analysis = "blastn", bioproject = "PRJNA1159911" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5411891 | 5411891 | PRJNA1159911_P_NODE_94745_length_245_cov_1.645349_g94203_i0 | PRJNA1159911 | 94745 | 245 | 1.645349 | 4.03110505 | Frigoriglobus tundricola | 2774151 | Bacteria | Bacteria | 375 | 1.16e-99 | NTclustered | gi|1870286614|gb|CP053452.2| | 2774151 | g94203 | i0 | 94.286 | 5.24897959183673 | 245 | 14 | 100 | 0 | 1 | 245 | 5464731 | 5464487 | Frigoriglobus tundricola strain PL17 chromosome, complete genome | blastn | 1286 | 375 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Frigoriglobus | Frigoriglobus tundricola | |
| 13062570 | 13062570 | PRJNA1159911_P_NODE_99711_length_242_cov_0.911243_g99169_i0 | PRJNA1159911 | 99711 | 242 | 0.911243 | 2.20520806 | uncultured Gemmataceae bacterium | 1914239 | Bacteria | Bacteria | 255 | 1.55e-63 | NTclustered | gi|2874253853|emb|OY969909.1| | 1914239 | g99169 | i0 | 86.9 | 1.76446280991736 | 229 | 28 | 94 | 2 | 1 | 228 | 4233121 | 4232894 | MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 | blastn | 427 | 255 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | uncultured Gemmataceae bacterium | ||
| 15610902 | 15610902 | PRJNA1159911_P_NODE_593_length_5362_cov_5.504821_g572_i0 | PRJNA1159911 | 593 | 5362 | 5.504821 | 295.16850202 | Tautonia plasticadhaerens | 2527974 | Bacteria | Bacteria | 896 | 0 | NTclustered | gi|1712713678|gb|CP036426.1| | 2527974 | g572 | i0 | 83.738 | 19.5701230883998 | 947 | 154 | 18 | 0 | 4042 | 4988 | 5173835 | 5174781 | Tautonia plasticadhaerens strain ElP chromosome | blastn | 104935 | 896 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Tautonia | Tautonia plasticadhaerens | |
| 19434825 | 19434825 | PRJNA1159911_P_NODE_94136_length_246_cov_0.890173_g93594_i0 | PRJNA1159911 | 94136 | 246 | 0.890173 | 2.18982558 | Humisphaera borealis | 2807512 | Bacteria | Bacteria | 198 | 2.7e-46 | NTclustered | gi|1927742986|gb|CP063458.1| | 2807512 | g93594 | i0 | 86.74 | 5.95528455284553 | 181 | 21 | 73 | 2 | 56 | 235 | 5064176 | 5064354 | Humisphaera borealis strain M1803 chromosome, complete genome | blastn | 1465 | 198 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Tepidisphaerales | Tepidisphaeraceae | Humisphaera | Humisphaera borealis | |
| 21985440 | 21985440 | PRJNA1159911_P_NODE_87358_length_251_cov_0.865169_g86816_i0 | PRJNA1159911 | 87358 | 251 | 0.865169 | 2.17157419 | Urbifossiella limnaea | 2528023 | Bacteria | Bacteria | 436 | 5.369999999999999e-118 | NTclustered | gi|1712585314|gb|CP036273.1| | 2528023 | g86816 | i0 | 98.008 | 57.4342629482072 | 251 | 5 | 100 | 0 | 1 | 251 | 2019585 | 2019835 | Urbifossiella limnaea strain ETA_A1 chromosome, complete genome | blastn | 14416 | 436 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Gemmatales | Gemmataceae | Urbifossiella | Urbifossiella limnaea | |
| 23260830 | 23260830 | PRJNA1159911_P_NODE_85559_length_253_cov_1.305556_g85017_i0 | PRJNA1159911 | 85559 | 253 | 1.305556 | 3.30305668 | Singulisphaera sp. Ch08 | 3120278 | Bacteria | Bacteria | 78.7 | 3.79e-10 | NTclustered | gi|2732846650|gb|CP155447.1| | 3120278 | g85017 | i0 | 74.872 | 0.770750988142292 | 195 | 38 | 75 | 8 | 1 | 190 | 5268404 | 5268216 | Singulisphaera sp. Ch08 chromosome, complete genome | blastn | 195 | 78.7 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Isosphaerales | Isosphaeraceae | Singulisphaera | Singulisphaera sp. Ch08 | |
| 24534893 | 24534893 | PRJNA1159911_P_NODE_99380_length_242_cov_0.911243_g98838_i0 | PRJNA1159911 | 99380 | 242 | 0.911243 | 2.20520806 | Opitutus sp. GAS368 | 1882749 | Bacteria | Bacteria | 292 | 1.18e-74 | NTclustered | gi|1085764882|emb|LT629735.1| | 1882749 | g98838 | i0 | 91.204 | 18.1611570247934 | 216 | 17 | 89 | 2 | 28 | 242 | 554688 | 554902 | Opitutus sp. GAS368 genome assembly, chromosome: I | blastn | 4395 | 292 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. GAS368 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;