RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1159911" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1159911 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2858888 2858888 PRJNA1159911_P_NODE_55423_length_326_cov_1.094862_g54881_i0 PRJNA1159911 55423 326 1.094862 3.56925012 Dictyostelium purpureum 5786 Evosea other_Eukaryota 60.2 1.83e-4   NTclustered gi|330794161|ref|XM_003285101.1| 5786 g54881 i0 89.796 7.51840490797546 49 2 14 3 99 145 1420 1467 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_76102), partial mRNA blastn 2451 60.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
16885760 16885760 PRJNA1159911_P_NODE_86534_length_251_cov_2.044944_g85992_i0 PRJNA1159911 86534 251 2.044944 5.13280944 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 396 9.119999999999996e-106   NTclustered gi|221185864|gb|FJ577811.1| 590481 g85992 i0 97.046 77.9322709163347 237 3 94 4 10 244 1011 777 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 19561 396 1 Eukaryota Amoebozoa             uncultured Amoebozoa
20708492 20708492 PRJNA1159911_P_NODE_102077_length_238_cov_2.400000_g101535_i0 PRJNA1159911 102077 238 2.4 5.712 Entamoeba invadens 33085 Evosea other_Eukaryota 62.1 3.55e-5   NTclustered gi|511091352|dbj|AK423018.1| 33085 g101535 i0 78.723 14.2478991596639 94 18 39 2 101 193 857 765 Entamoeba invadens cDNA clone: Xei-008C04, hypothetical protein, complete cds, strain: IP1 blastn 3391 62.1 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;