RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1158727" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1158727 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7957840 7957840 PRJNA1158727_P_NODE_21727_length_1039_cov_3.526915_g16221_i0 PRJNA1158727 21727 1039 3.526915 36.64464685 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 455 6.88e-123   NTclustered gi|60698688|gb|AY915747.1| 6182 g16221 i0 96.703 3.87776708373436 273 9 26 0 260 532 419 147 Schistosoma japonicum SJCHGC09661 protein mRNA, partial cds blastn 4029 455 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
9234260 9234260 PRJNA1158727_P_NODE_72768_length_363_cov_12.648276_g65307_i0 PRJNA1158727 72768 363 12.648276 45.91324188 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 305 2.39e-78   NTclustered gi|56757963|gb|AY815390.1| 6182 g65307 i0 93.72 68.0550964187328 207 8 56 2 1 203 1901 2106 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 24704 305 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
10507013 10507013 PRJNA1158727_P_NODE_106629_length_283_cov_5.895238_g99168_i0 PRJNA1158727 106629 283 5.895238 16.68352354 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 387 6.3e-103   NTclustered gi|56753506|gb|AY813225.1| 6182 g99168 i0 98.198 101.611307420495 222 2 100 2 63 283 531 751 Schistosoma japonicum SJCHGC06004 protein mRNA, complete cds blastn 28756 390 0.992307692307692 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
23255810 23255810 PRJNA1158727_P_NODE_122579_length_264_cov_1.743455_g115118_i0 PRJNA1158727 122579 264 1.743455 4.6027212 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 159 1.38e-34   NTclustered gi|60600058|gb|AY810684.1| 6182 g115118 i0 97.826 6.87121212121212 92 2 64 0 79 170 92 1 Schistosoma japonicum SJCHGC04723 protein mRNA, partial cds blastn 1814 159 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
24530322 24530322 PRJNA1158727_P_NODE_159380_length_242_cov_1.295858_g151918_i0 PRJNA1158727 159380 242 1.295858 3.13597636 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 448 2.3799999999999995e-121   NTclustered gi|73765568|gb|DQ130050.1| 6183 g151918 i0 100 13.8388429752066 242 0 100 0 1 242 298 57 Schistosoma mansoni IL-4-inducing protein gene, complete cds blastn 3349 448 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;