RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1158727" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1158727 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1578972 1578972 PRJNA1158727_P_NODE_160762_length_242_cov_0.911243_g153300_i0 PRJNA1158727 160762 242 0.911243 2.20520806 Peronospora aparines 162109 SAR_Eukaryotes SAR_Eukaryotes 442 1.1099999999999995e-119   NTclustered gi|23306501|gb|AY035484.1| 162109 g153300 i0 99.587 100.50826446281 242 1 100 0 1 242 268 509 Peronospora aparines isolate MG 4-5 large subunit ribosomal RNA gene, partial sequence blastn 24323 442 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora aparines
4130448 4130448 PRJNA1158727_P_NODE_121004_length_266_cov_1.595855_g113543_i0 PRJNA1158727 121004 266 1.595855 4.2449743 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 235 2.25e-57   NTclustered gi|695369285|ref|XM_009515721.1| 67593 g113543 i0 85.526 79 228 29 85 4 39 264 2394 2619 Phytophthora sojae hypothetical protein mRNA blastn 21014 235 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
11784231 11784231 PRJNA1158727_P_NODE_48650_length_513_cov_7.159091_g41200_i0 PRJNA1158727 48650 513 7.159091 36.72613683 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 5.88e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g41200 i0 80.533 65.9415204678363 375 65 72 4 127 494 441 68 Aphanomyces astaci polyubiquitin mRNA blastn 33828 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
16883741 16883741 PRJNA1158727_P_NODE_87434_length_319_cov_2.337398_g79973_i0 PRJNA1158727 87434 319 2.337398 7.45629962 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 263 1.27e-65   NTclustered gi|1219685856|gb|KY965925.1| 1440116 g79973 i0 83.108 33.4012539184953 296 42 92 8 24 315 391 682 Lagenidium giganteum f. caninum isolate UF15-01 heat shock protein 90 (hsp90) gene, partial cds blastn 10655 263 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;