RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1158727" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1158727 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2312729 2312729 PRJNA1158727_P_NODE_120182_length_267_cov_1.546392_g112721_i0 PRJNA1158727 120182 267 1.546392 4.12886664 Nitrospira 1234 Bacteria Bacteria 399 7.569999999999998e-107   NTclustered gi|2511635996|gb|CP126122.1| 70125 g112721 i0 94.253 97.7153558052434 261 15 98 0 1 261 751815 752075 MAG: Nitrospira sp. isolate bin_005 chromosome blastn 26090 399 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
10508173 10508173 PRJNA1158727_P_NODE_163909_length_241_cov_0.916667_g156447_i0 PRJNA1158727 163909 241 0.916667 2.20916747 Nitrospira defluvii 330214 Bacteria Bacteria 235 2.0099999999999997e-57   NTclustered gi|300603458|emb|FP929003.1| 330214 g156447 i0 84.647 2.96680497925311 241 31 99 5 2 239 4294083 4293846 Candidatus Nitrospira defluvii chromosome, complete genome blastn 715 235 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira defluvii
15606331 15606331 PRJNA1158727_P_NODE_120853_length_266_cov_1.595855_g113392_i0 PRJNA1158727 120853 266 1.595855 4.2449743 Nitrospira sp. 70125 Bacteria Bacteria 364 2.7499999999999986e-96   NTclustered gi|2290911150|gb|CP060501.1| 70125 g113392 i0 91.386 1.00375939849624 267 21 100 2 1 266 3849319 3849584 MAG: Nitrospira sp. isolate NSFW chromosome, complete genome blastn 267 364 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
18889067 18889067 PRJNA1158727_P_NODE_139055_length_250_cov_0.870056_g131593_i0 PRJNA1158727 139055 250 0.870056 2.17514 Nitrospira 1234 Bacteria Bacteria 377 3.29e-100   NTclustered gi|1167499077|emb|LT828648.1| 1325564 g131593 i0 93.976 26.86 249 15 99 0 2 250 2391542 2391790 Nitrospira japonica isolate Genome sequencing of Nitrospira japonica strain NJ11 genome assembly, chromosome: I blastn 6715 377 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira japonica
19430043 19430043 PRJNA1158727_P_NODE_142576_length_248_cov_1.582857_g135114_i0 PRJNA1158727 142576 248 1.582857 3.92548536 Nitrospira sp. 70125 Bacteria Bacteria 403 5.38e-108   NTclustered gi|2290907019|gb|CP060499.1| 70125 g135114 i0 95.968 74.5241935483871 248 10 100 0 1 248 2683244 2683491 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 18482 403 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
19431540 19431540 PRJNA1158727_P_NODE_46296_length_537_cov_1.612069_g38851_i0 PRJNA1158727 46296 537 1.612069 8.65681053 Nitrospira sp. 70125 Bacteria Bacteria 869 0   NTclustered gi|2290907019|gb|CP060499.1| 70125 g38851 i0 95.911 137 538 18 100 4 1 537 2683913 2684447 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 73569 869 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;