RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1158727" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1158727 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1578684 1578684 PRJNA1158727_P_NODE_145862_length_247_cov_0.885057_g138400_i0 PRJNA1158727 145862 247 0.885057 2.18609079 Dreissena polymorpha 45954 Mollusca Mollusca 52.8 0.022   NTclustered gi|2364443884|ref|XM_052422537.1| 45954 g138400 i0 96.875 1.4251012145749 32 0 13 1 25 55 3570 3601 PREDICTED: Dreissena polymorpha kelch-like protein 5 (LOC127876979), transcript variant X3, mRNA blastn 352 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Dreissenidae Dreissena Dreissena polymorpha
2854801 2854801 PRJNA1158727_P_NODE_136243_length_251_cov_0.865169_g128781_i0 PRJNA1158727 136243 251 0.865169 2.17157419 Bradybaena similaris 145626 Mollusca Mollusca 71.3 6.28e-8   NTclustered gi|2912993551|dbj|AP039598.1| 145626 g128781 i0 95.455 0.175298804780877 44 2 18 0 208 251 62006656 62006613 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 17, sequence blastn 44 71.3 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
11784384 11784384 PRJNA1158727_P_NODE_53530_length_470_cov_2.171285_g46072_i0 PRJNA1158727 53530 470 2.171285 10.2050395 Octopus bimaculoides 37653 Mollusca Mollusca 52.8 0.046   NTclustered gi|2427297130|ref|XM_052977244.1| 37653 g46072 i0 100 0.178723404255319 28 0 6 0 159 186 422 449 PREDICTED: Octopus bimaculoides uncharacterized LOC106868911 (LOC106868911), transcript variant X3, mRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Cephalopoda Octopoda Octopodidae Octopus Octopus bimaculoides
19429268 19429268 PRJNA1158727_P_NODE_105676_length_285_cov_1.169811_g98215_i0 PRJNA1158727 105676 285 1.169811 3.33396135 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.026   NTclustered gi|2912988862|dbj|AP039593.1| 145626 g98215 i0 100 0.0982456140350877 28 0 10 0 239 266 43967765 43967792 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 12, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
21982137 21982137 PRJNA1158727_P_NODE_39698_length_623_cov_1.645455_g32316_i0 PRJNA1158727 39698 623 1.645455 10.25118465 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.017   NTclustered gi|2912993551|dbj|AP039598.1| 145626 g32316 i0 100 0.0465489566613162 29 0 5 0 187 215 25244099 25244127 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 17, sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
24529501 24529501 PRJNA1158727_P_NODE_119920_length_267_cov_1.768041_g112459_i0 PRJNA1158727 119920 267 1.768041 4.72066947 Bradybaena similaris 145626 Mollusca Mollusca 56.5 0.002   NTclustered gi|2912999222|dbj|AP039605.1| 145626 g112459 i0 100 0.112359550561798 30 0 11 0 134 163 56522054 56522025 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 24, sequence blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;