RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1158727" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA1158727 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6140328 6140328 PRJNA1158727_P_NODE_134365_length_251_cov_1.730337_g126903_i0 PRJNA1158727 134365 251 1.730337 4.34314587 Naegleria 5761 Heterolobosea other_Eukaryota 459 1.1499999999999996e-124   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g126903 i0 99.602 100.876494023904 251 1 100 0 1 251 5108 4858 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 25320 459 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
7958630 7958630 PRJNA1158727_P_NODE_44907_length_553_cov_2.204167_g37474_i0 PRJNA1158727 44907 553 2.204167 12.18904351 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 1016 0   NTclustered gi|32479131|gb|AY321362.1| 51634 g37474 i0 99.819 94.5171790235081 553 1 100 0 1 553 1416 1968 Naegleria australiensis isolate TT 18S ribosomal RNA gene, partial sequence blastn 52268 1016 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
12516479 12516479 PRJNA1158727_P_NODE_78370_length_344_cov_2.612546_g70909_i0 PRJNA1158727 78370 344 2.612546 8.98715824 Naegleria 5761 Heterolobosea other_Eukaryota 619 7.109999999999999e-173   NTclustered gi|2618963742|gb|OR769034.1| 5762 g70909 i0 99.413 40.3953488372093 341 2 99 0 4 344 4430 4090 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 13896 625 0.9904 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
12516544 12516544 PRJNA1158727_P_NODE_93690_length_305_cov_3.051724_g86229_i0 PRJNA1158727 93690 305 3.051724 9.3077582 Naegleria 5761 Heterolobosea other_Eukaryota 558 1.37e-154   NTclustered gi|2618963742|gb|OR769034.1| 5762 g86229 i0 99.672 10.1377049180328 305 1 100 0 1 305 5488 5792 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 3092 558 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
15608035 15608035 PRJNA1158727_P_NODE_37173_length_664_cov_3.360406_g29838_i0 PRJNA1158727 37173 664 3.360406 22.31309584 Naegleria australiensis 51634 Heterolobosea other_Eukaryota 1210 0   NTclustered gi|2476253407|gb|OQ627480.1| 51634 g29838 i0 99.548 34.1867469879518 664 3 100 0 1 664 2567 3230 Naegleria australiensis strain PP397 rDNA-containing extrachromosomal element genomic sequence; small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 22700 1210 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;