RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1158727" and tax_phylum = "Evosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1158727 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1037795 1037795 PRJNA1158727_P_NODE_88501_length_317_cov_1.032787_g81040_i0 PRJNA1158727 88501 317 1.032787 3.27393479 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 427 4.22e-115   NTclustered gi|330840543|ref|XM_003292226.1| 5786 g81040 i0 91.586 97.6214511041009 309 26 97 0 9 317 437 129 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_92832), mRNA blastn 30946 429 0.995337995337995 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
4865730 4865730 PRJNA1158727_P_NODE_57764_length_440_cov_1.117166_g50303_i0 PRJNA1158727 57764 440 1.117166 4.9155304 Dictyostelium 5782 Evosea other_Eukaryota 551 3.4399999999999983e-152   NTclustered gi|330841829|ref|XM_003292845.1| 5786 g50303 i0 89.607 97.2772727272727 433 45 98 0 7 439 1042 610 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_73394), mRNA blastn 42802 556 0.991007194244604 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
18155428 18155428 PRJNA1158727_P_NODE_125615_length_261_cov_1.367021_g118154_i0 PRJNA1158727 125615 261 1.367021 3.56792481 Tychosporium acutostipes 668358 Evosea other_Eukaryota 399 7.379999999999998e-107   NTclustered gi|2467140639|dbj|LC720133.1| 668358 g118154 i0 94.253 52.5210727969349 261 15 100 0 1 261 11 271 Tychosporium acutostipes YIP-60 gene for 18S rRNA, partial sequence blastn 13708 399 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
18158002 18158002 PRJNA1158727_P_NODE_72095_length_366_cov_1.576792_g64634_i0 PRJNA1158727 72095 366 1.576792 5.77105872 Arcyria cinerea 137621 Evosea other_Eukaryota 231 4.16e-56   NTclustered gi|2772191635|gb|PQ014995.1| 137621 g64634 i0 78.857 71.0027322404372 350 68 95 6 17 363 170 516 Arcyria cinerea voucher TUF105910 translation elongation factor 1-alpha (EF1a) gene, partial cds blastn 25987 231 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria cinerea
19432768 19432768 PRJNA1158727_P_NODE_90316_length_312_cov_2.577406_g82855_i0 PRJNA1158727 90316 312 2.577406 8.04150672 Tychosporium acutostipes 668358 Evosea other_Eukaryota 483 8.729999999999998e-132   NTclustered gi|256550195|gb|FJ792703.1| 668358 g82855 i0 94.551 21.9711538461538 312 17 100 0 1 312 542 853 Tychosporium acutostipes strain KE11AL small subunit ribosomal RNA gene, partial sequence blastn 6855 483 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida   Tychosporium Tychosporium acutostipes
21979907 21979907 PRJNA1158727_P_NODE_100618_length_292_cov_1.050228_g93157_i0 PRJNA1158727 100618 292 1.050228 3.06666576 Dictyostelium purpureum 5786 Evosea other_Eukaryota 52.8 0.027   NTclustered gi|330795589|ref|XM_003285807.1| 5786 g93157 i0 100 0.0958904109589041 28 0 10 0 244 271 951 978 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_94041), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;