RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1158727" and tax_phylum = "Campylobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1158727 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7956598 7956598 PRJNA1158727_P_NODE_117647_length_270_cov_1.482234_g110186_i0 PRJNA1158727 117647 270 1.482234 4.0020318 Campylobacter concisus 199 Bacteria Bacteria 466 7.46e-127   NTclustered gi|1938715890|gb|CP049263.1| 199 g110186 i0 97.778 11 270 6 100 0 1 270 1289033 1288764 Campylobacter concisus strain H16O-S1 chromosome, complete genome blastn 2970 466 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
11782297 11782297 PRJNA1158727_P_NODE_125370_length_261_cov_1.638298_g117909_i0 PRJNA1158727 125370 261 1.638298 4.27595778 Arcobacter ellisii 913109 Bacteria Bacteria 483 7.12e-132   NTclustered gi|1474793334|gb|CP032097.1| 913109 g117909 i0 100 14.5900383141762 261 0 100 0 1 261 257805 257545 Arcobacter ellisii strain LMG 26155 chromosome, complete genome blastn 3808 483 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter ellisii
24530114 24530114 PRJNA1158727_P_NODE_149480_length_246_cov_0.890173_g142018_i0 PRJNA1158727 149480 246 0.890173 2.18982558 Sulfurospirillum barnesii 44674 Bacteria Bacteria 366 6.99e-97   NTclustered gi|390192281|gb|CP003333.1| 760154 g142018 i0 93.496 2.69918699186992 246 16 100 0 1 246 387952 387707 Sulfurospirillum barnesii SES-3, complete genome blastn 664 366 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum barnesii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;