RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1158727" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1158727 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10508155 10508155 PRJNA1158727_P_NODE_162949_length_241_cov_0.916667_g155487_i0 PRJNA1158727 162949 241 0.916667 2.20916747 Bdellovibrio sp. HCB-162 3394234 Bacteria Bacteria 261 3.31e-65   NTclustered gi|2898207634|gb|CP178861.1| 3394234 g155487 i0 86.555 9.40663900414938 238 30 98 2 5 241 1840023 1840259 Bdellovibrio sp. HCB-162 chromosome, complete genome blastn 2267 261 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB-162
13060259 13060259 PRJNA1158727_P_NODE_84491_length_327_cov_1.452756_g77030_i0 PRJNA1158727 84491 327 1.452756 4.75051212 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 425 1.57e-114   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g77030 i0 90.214 177.562691131498 327 30 99 2 1 326 666173 666498 Bdellovibrio sp. qaytius chromosome, complete genome blastn 58063 425 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
21980769 21980769 PRJNA1158727_P_NODE_140898_length_249_cov_0.875000_g133436_i0 PRJNA1158727 140898 249 0.875 2.17875 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 368 1.97e-97   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g133436 i0 93.548 136.429718875502 248 15 99 1 3 249 3447954 3447707 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 33971 368 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;